scRNAtools_cor_map_r: Present correlation index in figure

In scRNAtools: Single Cell RNA Sequencing Data Analysis Tools

Description

Correlation analysis with correlation index of interested gene set or differentially expressed gene set.

Usage

scRNAtools_cor_map_r(exam1, types_all, type, methods)

Arguments

exam1	scRNA sequencing data of several genes and cells.
types_all	Cell names of each type.
type	Cell type.
methods	correlation methods including "pearson", "kendall" and "spearman".

Details

Return the correlation index of each two genes.

Author(s)

Qian Yang

Examples

data(exam1)
data(types_all)
type<-"Malignant";
methods<-"pearson";##methods = c("pearson", "kendall", "spearman").
pdf(file=file.path(tempdir(), "correlation_num.pdf"))
scRNAtools_cor_map_r(exam1,types_all,type,methods)
dev.off()

scRNAtools documentation built on May 2, 2019, 2:43 a.m.