f_score_profile_cor: Calculate cell type score: U-test

In scROSHI: Robust Supervised Hierarchical Identification of Single Cells

Calculate cell type score: U-test

Description

Calculate cell type score: U-test

Usage

f_score_profile_cor(sce, lprof, min_genes = 5, verbose = 0)

Arguments

sce	A SingleCellExperiment object containing the expression profiles of the single cell analysis.
lprof	List of profiles (named expression vectors).
min_genes	Minimum number of genes.
verbose	Level of verbosity. Zero means silent, one makes a verbose output.

Value

Matrix containing the cell type scores.

Examples

data("test_sce_data")
set.seed(123)
prof1 <- rpois(n = 20, lambda = 3)
names(prof1) <- rownames(test_sce_data)[51:70]
prof2 <- rpois(n = 20, lambda = 5)
names(prof2) <-  rownames(test_sce_data)[71:90]
lprof <- list(prof1 = prof1, prof2 = prof2)
f_score_profile_cor(test_sce_data[,1:3], lprof, min_genes = 5, verbose = 0)

scROSHI documentation built on Jan. 10, 2023, 5:11 p.m.