Man pages for scphaser
Phase Variants Within Genes Using Allele Counts
| call_gt | Call transcribed genotypes |
| filter_acset | Filter variants and features |
| filter_feat_nminvar | Filter features on minimal number of required variants |
| filter_homovars | Filter homozygous variants |
| filter_var_gt | Filter variants |
| filter_zerorow | Filter variants with zero allele counts in all cells |
| marinov | Single-cell RNA-seq allele counts for the Marinov et al... |
| mousehybrid | Single-cell RNA-seq allele counts for a mouse-hybrid dataset |
| new_acset | Construct an allele count set |
| phase | Phasing of alleles |
| plot_conc | Phasing concordance plot |
| racset | Randomize an acset |
| set_gt_conc | Cell-distribution variability upon phasing |
| subset_cols | Subset cells |
| subset_feat | Subset features |
| subset_rows | Subset variants |
