scrm-package: Simulating the evolution of biological sequences
In scrm: Simulating the Evolution of Biological Sequences
scrm-package R Documentation
Simulating the evolution of biological sequences
Description
The Sequential Coalescent with Recombination Model (SCRM) is an
approximation of the Ancestral Recombination Graph. It can be used to
simulate the neutral evolution of chromosomes/biological sequences
subject to possibly complicated population structure.
The program scrm is an implementation of this model that is designed to
act as an drop-in replacement for the widely adopted coalescent simulator
ms. This package contains scrm along with an R interface.
Author(s)
Paul Staab,
Zhu Sha,
Dirk Metzler &
Gerton Lunter
Maintainer: Paul Staab develop@paulstaab.de
See Also
-
scrm for details on how to use scrm,
-
vignette('scrm-Arguments') for an overview of command line arguments and
-
vignette('scrm-TreesForApe') for an example on using
genealogies simulated with scrm with package 'ape'.
scrm documentation built on May 29, 2024, 2:30 a.m.
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| scrm-package | R Documentation |
Simulating the evolution of biological sequences
Description
The Sequential Coalescent with Recombination Model (SCRM) is an approximation of the Ancestral Recombination Graph. It can be used to simulate the neutral evolution of chromosomes/biological sequences subject to possibly complicated population structure. The program scrm is an implementation of this model that is designed to act as an drop-in replacement for the widely adopted coalescent simulator ms. This package contains scrm along with an R interface.
Author(s)
Paul Staab, Zhu Sha, Dirk Metzler & Gerton Lunter
Maintainer: Paul Staab develop@paulstaab.de
See Also
-
scrmfor details on how to use scrm, -
vignette('scrm-Arguments')for an overview of command line arguments and -
vignette('scrm-TreesForApe')for an example on using genealogies simulated with scrm with package 'ape'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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