scrubr: Clean Biological Occurrence Records

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Clean biological occurrence records. Includes functionality for cleaning based on various aspects of spatial coordinates, unlikely values due to political 'centroids', coordinates based on where collections of specimens are held, and more.

Author
Scott Chamberlain [aut, cre]
Date of publication
2016-03-08 00:23:05
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.1.1
URLs

View on CRAN

Man pages

coords
Coordinate based cleaning
date
Date based cleaning
dedup
Deduplicate records
dframe
Compact data.frame
pipe
Pipe operator
sample_data_1
Sample data.frame 1
sample_data_2
Sample data.frame number 2
sample_data_3
Sample data.frame number 3
sample_data_4
Sample data.frame number 4
scrubr_datasets
scrubr datasets
scrubr-package
scrubr - Clean biological occurrence data
taxonomy
Taxonomy based cleaning
type_summ
type_summ

Files in this package

scrubr
scrubr/inst
scrubr/inst/ignore
scrubr/inst/ignore/cleangbifcoords.py
scrubr/inst/extdata
scrubr/inst/extdata/README.md
scrubr/inst/extdata/herbaria.csv
scrubr/inst/doc
scrubr/inst/doc/scrubr_vignette.html
scrubr/inst/doc/scrubr_vignette.Rmd
scrubr/inst/vign
scrubr/inst/vign/scrubr_vignette.md
scrubr/inst/vign/scrubr_vignette.Rmd
scrubr/tests
scrubr/tests/testthat
scrubr/tests/testthat/test-dates.R
scrubr/tests/testthat/test-taxonomy.R
scrubr/tests/testthat/test-coords.R
scrubr/tests/testthat/taxdata1.rds
scrubr/tests/testthat/test-dedup.R
scrubr/tests/testthat/test-dframe.R
scrubr/tests/test-all.R
scrubr/NAMESPACE
scrubr/NEWS.md
scrubr/data
scrubr/data/sampledata4.rda
scrubr/data/sampledata3.rda
scrubr/data/sampledata2.rda
scrubr/data/sampledata1.rda
scrubr/R
scrubr/R/scrubr-package.R
scrubr/R/clean_df.R
scrubr/R/scrubr_datasets.R
scrubr/R/date-funs.R
scrubr/R/pipe.R
scrubr/R/do_coords.R
scrubr/R/coord-funs.R
scrubr/R/dedup.R
scrubr/R/print.R
scrubr/R/reassign.R
scrubr/R/rename.R
scrubr/R/trunc2.R
scrubr/R/guess_name.R
scrubr/R/taxonomy-funs.R
scrubr/R/zzz.R
scrubr/R/guess_latlon.R
scrubr/vignettes
scrubr/vignettes/scrubr_vignette.Rmd
scrubr/README.md
scrubr/MD5
scrubr/build
scrubr/build/vignette.rds
scrubr/DESCRIPTION
scrubr/man
scrubr/man/scrubr-package.Rd
scrubr/man/pipe.Rd
scrubr/man/dframe.Rd
scrubr/man/sample_data_2.Rd
scrubr/man/sample_data_4.Rd
scrubr/man/scrubr_datasets.Rd
scrubr/man/coords.Rd
scrubr/man/taxonomy.Rd
scrubr/man/dedup.Rd
scrubr/man/sample_data_3.Rd
scrubr/man/type_summ.Rd
scrubr/man/date.Rd
scrubr/man/sample_data_1.Rd
scrubr/LICENSE