sdef: Synthesizing List of Differentially Expressed Features

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Performs two tests to evaluate if the experiments are associated and returns a list of interesting features common to all the experiments.

Author
Alberto Cassese, Marta Blangiardo
Date of publication
2015-07-06 18:29:16
Maintainer
Alberto Cassese <alberto.cassese@maastrichtuniversity.nl>
License
GPL-2
Version
1.6

View on CRAN

Man pages

baymod
Bayesian model for the ratio of observed to expected...
createTable
Function to create an output table
designCount
Internal function
designMatrix
Internal function
Example3Lists
Molecular Differences between Mammalian Sexes.
extractFeatures.R
Extracting the lists of features of interest
extractFeatures.T
Extracting the lists of features of interest
Liver.Muscle
Diabetes susceptibility in liver and skeletal muscle of mice.
ratio
Ratio Th between the observed features in common and the...
sdef-package
Synthesizing List of Differentially Expressed Features
simulation
Simulate p-values for two related experiments
simulation.indep
Simulate p-values for two indipendent experiments
Tmc
Empirical null distribution of max T(h)

Files in this package

sdef
sdef/NAMESPACE
sdef/data
sdef/data/Example3Lists.rda
sdef/data/Liver.Muscle.rda
sdef/R
sdef/R/createTable.R
sdef/R/simulation.indep.R
sdef/R/Tmc.R
sdef/R/simulation.R
sdef/R/designCount.R
sdef/R/designMatrix.R
sdef/R/extractFeatures.R.R
sdef/R/baymod.R
sdef/R/extractFeatures.T.R
sdef/R/ratio.R
sdef/MD5
sdef/DESCRIPTION
sdef/man
sdef/man/Tmc.Rd
sdef/man/simulation.Rd
sdef/man/baymod.Rd
sdef/man/ratio.Rd
sdef/man/Liver.Muscle.Rd
sdef/man/simulation.indep.Rd
sdef/man/extractFeatures.T.Rd
sdef/man/sdef-package.Rd
sdef/man/designMatrix.Rd
sdef/man/designCount.Rd
sdef/man/createTable.Rd
sdef/man/extractFeatures.R.Rd
sdef/man/Example3Lists.Rd