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sdmTMB: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB'
Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2024) <doi:10.1101/2022.03.24.485545>.
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| Author | Sean C. Anderson [aut, cre] (<https://orcid.org/0000-0001-9563-1937>), Eric J. Ward [aut] (<https://orcid.org/0000-0002-4359-0296>), Philina A. English [aut] (<https://orcid.org/0000-0003-2992-6782>), Lewis A. K. Barnett [aut] (<https://orcid.org/0000-0002-9381-8375>), James T. Thorson [aut, cph] (<https://orcid.org/0000-0001-7415-1010>, VAST author), Joe Watson [ctb] (Censored Poisson), Julia Indivero [ctb] (Vignette writing), Jillian C. Dunic [ctb] (<https://orcid.org/0000-0002-0729-3083>), Cole C. Monnahan [ctb, cph] (<https://orcid.org/0000-0003-0871-6700>, VAST contributor), Mollie Brooks [ctb, cph] (<https://orcid.org/0000-0001-6963-8326>, glmmTMB author), Ben Bolker [ctb, cph] (<https://orcid.org/0000-0002-2127-0443>, glmmTMB author), Kasper Kristensen [ctb, cph] (TMB/glmmTMB author), Martin Maechler [ctb, cph] (<https://orcid.org/0000-0002-8685-9910>, glmmTMB author), Arni Magnusson [ctb, cph] (<https://orcid.org/0000-0003-2769-6741>, glmmTMB author), Hans J. Skaug [ctb, cph] (glmmTMB author, SPDE barrier), Anders Nielsen [ctb, cph] (<https://orcid.org/0000-0001-9683-9262>, glmmTMB author), Casper Berg [ctb, cph] (<https://orcid.org/0000-0002-3812-5269>, glmmTMB author), Koen van Bentham [ctb, cph] (glmmTMB author), Olav Nikolai Breivik [ctb, cph] (SPDE barrier), Simon Wood [ctb, cph] (mgcv: smoother prediction), Paul-Christian Bürkner [ctb, cph] (brms: smoother matrix parsing), His Majesty the King in Right of Canada, as represented by the Minister of the Department of Fisheries and Oceans [cph] |
| Maintainer | Sean C. Anderson <sean@seananderson.ca> |
| License | GPL-3 |
| Version | 0.6.0 |
| URL | https://pbs-assess.github.io/sdmTMB/ https://github.com/pbs-assess/sdmTMB |
| Package repository | View on CRAN |
| Installation |
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