sdnet: Soft-Discretization-Based Bayesian Network Inference

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Fitting discrete Bayesian networks using soft-discretized data. Soft-discretization is based on mixture of normal distributions. Also implemented is a supervised Bayesian network learning employing Kullback-Leibler divergence.

Author
Nikolay Balov
Date of publication
2016-05-09 06:25:13
Maintainer
Nikolay Balov <nhbalov@gmail.com>
License
GPL (>= 2)
Version
2.3.8
URLs

View on CRAN

Man pages

catNetwork-class
Class "catNetwork"
catNetworkDistance-class
Class "catNetworkDistance"
catNetworkEvaluate-class
Classes "catNetworkEvaluate" and "dagEvaluate"
cnCatnetFromEdges
catNetwork from Edges
cnCatnetFromSif
Categorical Network from Simple Interaction File (SIF) and...
cnCluster
Network Clustering
cnCompare
Network Comparison
cnComplexity
Network Complexity
cnDiscretize
Data Categorization
cnDot
Network Description File
cnEdges
Network Edges
cnEntropy
Pairwise Node Entropy
cnFind
Find Network by Complexity
cnFindAIC
Find Network by AIC
cnFindBIC
Find Network by BIC
cnLoglik
Sample Log-likelihood
cnMatEdges
Network Edge Matrix
cnMatParents
Network Parent Matrix
cnNew
New catNetwork
cnNodeLoglik
Node Log-likelihood
cnNodeMarginalProb
Probability Calculations
cnNodes
Netwok Nodes
cnNodeSampleLoglik
Node Log-likelihood
cnNumNodes
Network Size
cnOrder
Network Node Order
cnParents
Network Parent Structure
cnParHist
Parenthood Histogram
cnPearsonTest
Goodness of Fit Test
cnPlot
Plot Network
cnPredict
Prediction
cnProb
Conditional Probability Structure
cnRandomCatnet
Random Network
cnReorderNodes
Reorder Network Nodes
cnSamples
Samples from Network
cnSearchHist
Parent Histogram Matrix
cnSearchOrder
Network Search for Given Node Order
cnSetProb
Set Probability from Data
cnSetSeed
Random Generator Seed
cnSubNetwork
Sub-Network
CPDAG-class
Class CPDAG
dag2cpdag
Complete Network Representation
expres
Naive Classifier of Gene Expression Profiles
isDAG
Check Direct Acyclic Graph (DAG) Condition
sdnet-package
sdnet: Soft Discretization-based Bayesian Network Inference
tyroid
Tyroid cancer data

Files in this package

sdnet
sdnet/src
sdnet/src/rcatnet_sa.h
sdnet/src/cache.h
sdnet/src/rcatnet_prob.cpp
sdnet/src/catnet_base.h
sdnet/src/pthread.cpp
sdnet/src/ccnInit.c
sdnet/src/dag_search_dc.h
sdnet/src/rcatnet.h
sdnet/src/rcatnet_search.h
sdnet/src/catnet_rexport.cpp
sdnet/src/dag_list.h
sdnet/src/problist.h
sdnet/src/catnet_quant.cpp
sdnet/src/thread.h
sdnet/src/rcatnet_search.cpp
sdnet/src/rcatnet_sa.cpp
sdnet/src/utils.h
sdnet/src/utils.cpp
sdnet/src/catnet_search.h
sdnet/src/catnetd.h
sdnet/src/catnet_rexport.h
sdnet/src/search_params.h
sdnet/src/rcatnet.cpp
sdnet/src/dag_search.h
sdnet/src/catnetp.h
sdnet/src/catnet_entropy.cpp
sdnet/src/rcatnet_hist.cpp
sdnet/src/cache.cpp
sdnet/src/rcatnet_hist.h
sdnet/NAMESPACE
sdnet/demo
sdnet/demo/00Index
sdnet/demo/tyroid.r
sdnet/data
sdnet/data/tyr1.rda
sdnet/data/tyr2.rda
sdnet/R
sdnet/R/entropy.R
sdnet/R/expres.r
sdnet/R/quant.R
sdnet/R/probs.R
sdnet/R/eval.R
sdnet/R/def.R
sdnet/R/plot.R
sdnet/R/predict.R
sdnet/R/dags.R
sdnet/R/chisq.R
sdnet/R/samples.R
sdnet/R/loglik.R
sdnet/R/search.R
sdnet/R/xdsl.R
sdnet/R/cluster.R
sdnet/R/dist.R
sdnet/R/graph2catnet.R
sdnet/R/marginal.prob.R
sdnet/R/joint.prob.R
sdnet/R/histo.R
sdnet/R/categor.R
sdnet/R/find.R
sdnet/R/class.R
sdnet/R/zzz.R
sdnet/R/bif.R
sdnet/MD5
sdnet/DESCRIPTION
sdnet/man
sdnet/man/cnCompare.Rd
sdnet/man/tyroid.Rd
sdnet/man/cnNodes.Rd
sdnet/man/sdnet-package.Rd
sdnet/man/cnFindAIC.Rd
sdnet/man/cnNumNodes.Rd
sdnet/man/cnDiscretize.Rd
sdnet/man/cnComplexity.Rd
sdnet/man/catNetworkDistance-class.Rd
sdnet/man/cnMatEdges.Rd
sdnet/man/cnSubNetwork.Rd
sdnet/man/cnPredict.Rd
sdnet/man/cnNodeSampleLoglik.Rd
sdnet/man/cnEntropy.Rd
sdnet/man/cnNodeMarginalProb.Rd
sdnet/man/cnMatParents.Rd
sdnet/man/dag2cpdag.Rd
sdnet/man/catNetwork-class.Rd
sdnet/man/expres.Rd
sdnet/man/cnEdges.Rd
sdnet/man/cnNew.Rd
sdnet/man/cnSamples.Rd
sdnet/man/cnCluster.Rd
sdnet/man/cnProb.Rd
sdnet/man/cnLoglik.Rd
sdnet/man/cnSetProb.Rd
sdnet/man/CPDAG-class.Rd
sdnet/man/cnNodeLoglik.Rd
sdnet/man/cnSearchHist.Rd
sdnet/man/cnPearsonTest.Rd
sdnet/man/isDAG.Rd
sdnet/man/cnOrder.Rd
sdnet/man/cnFind.Rd
sdnet/man/cnParHist.Rd
sdnet/man/cnDot.Rd
sdnet/man/cnCatnetFromEdges.Rd
sdnet/man/catNetworkEvaluate-class.Rd
sdnet/man/cnFindBIC.Rd
sdnet/man/cnSearchOrder.Rd
sdnet/man/cnRandomCatnet.Rd
sdnet/man/cnParents.Rd
sdnet/man/cnSetSeed.Rd
sdnet/man/cnReorderNodes.Rd
sdnet/man/cnCatnetFromSif.Rd
sdnet/man/cnPlot.Rd