tests/testthat/_snaps/derive_blfl.md

In sdtm.oak: SDTM Data Transformation Engine

derive_blfl example works

{
  "type": "list",
  "attributes": {
    "class": {
      "type": "character",
      "attributes": {},
      "value": ["tbl_df", "tbl", "data.frame"]
    },
    "row.names": {
      "type": "integer",
      "attributes": {},
      "value": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11]
    },
    "names": {
      "type": "character",
      "attributes": {},
      "value": ["DOMAIN", "oak_id", "raw_source", "patient_number", "USUBJID", "VSDTC", "VSTESTCD", "VSORRES", "VSSTAT", "VISIT", "VSTPT", "VSLOBXFL"]
    }
  },
  "value": [
    {
      "type": "character",
      "attributes": {},
      "value": ["VS", "VS", "VS", "VS", "VS", "VS", "VS", "VS", "VS", "VS", "VS"]
    },
    {
      "type": "integer",
      "attributes": {},
      "value": [1, 2, 1, 2, 1, 2, 1, 1, 2, 2, 3]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["VTLS1", "VTLS1", "VTLS1", "VTLS1", "VTLS2", "VTLS2", "VTLS1", "VTLS1", "VTLS1", "VTLS1", "VTLS1"]
    },
    {
      "type": "integer",
      "attributes": {},
      "value": [375, 375, 375, 375, 375, 375, 376, 376, 376, 378, 378]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["test_study-375", "test_study-375", "test_study-375", "test_study-375", "test_study-375", "test_study-375", "test_study-376", "test_study-376", "test_study-376", "test_study-378", "test_study-378"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["2020-09-01T13:31", "2020-10-01T11:20", "2020-09-28T10:10", "2020-10-01T13:31", "2020-09-28T10:10", "2020-09-28T10:05", "2020-09-20", "2020-09-20", "2020-09-20", "2020-01-20T10:00", "2020-01-21T11:00"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["DIABP", "DIABP", "PULSE", "PULSE", "SYSBP", "SYSBP", "DIABP", "PULSE", "PULSE", "PULSE", "PULSE"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["90", "90", "ND", "85", "120", "120", "75", null, "110", "110", "105"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": [null, null, null, null, null, null, null, "NOT DONE", null, null, null]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING", "SCREENING"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["PRE-DOSE", "30 DAY POST-DOSE", "28 DAY POST-DOSE", "30 DAY POST-DOSE", "28 DAY POST-DOSE", "28 DAY POST-DOSE",
      "PRE-DOSE", "PRE-DOSE", "PRE-DOSE", "PRE-DOSE", "1 DAY POST-DOSE"]
    },
    {
      "type": "character",
      "attributes": {},
      "value": ["Y", null, null, null, null, "Y", "Y", null, "Y", "Y", null]
    }
  ]
}

derive_blfl sdmt_in validations work

Required variable `DOMAIN` is missing in `sdtm_in`

Required variables `oak_id`, `raw_source`, and `patient_number` are missing in `sdtm_in`

Required variables `VSORRES`, `VSSTAT`, `VSTESTCD`, and `VSDTC` are missing in `sdtm_in`

derive_blfl dm_domain validations work

Required variables `USUBJID` and `RFXSTDTC` are missing in `dm_domain`

derive_blfl tgt_var and ref_var validations work

Argument `tgt_var` must be a scalar of class <character>, but is a list.

Argument `ref_var` must be a scalar of class <character>, but is a tibble.

Argument `tgt_var` must be equal to one of "VSBLFL" or "VSLOBXFL".

derive_blfl DOMAIN validation works

Argument `domain` must be a scalar of class <character>, but is an integer.

sdtm.oak documentation built on April 3, 2025, 9:37 p.m.