transformOutput: Transform Simulation Output

In secrdesign: Sampling Design for Spatially Explicit Capture-Recapture

Transform Simulation Output

Description

Transform output component of simulation output from run.scenarios. Typically this replaces an entire saved model fit with a table of estimates from that fit.

Usage

transformOutput(object, extractfn, outputtype = "predicted", ...)

Arguments

object	output from run.scenarios
extractfn	function such as the ‘extractfn’ argument of run.scenarios
outputtype	character (see Details)
...	other arguments passed to extractfn

Details

Each replicate of each scenario is transformed using ‘extractfn’, which should accept as input the object returned by the extractfn of the original call to run.scenarios. As a typical example, sims <- run.scenarios(..., fit = TRUE, extractfn = identity) returns outputs of class ‘secr’ and could be followed by sims2 <- transformOutput(sims, predict); sims2 may be used as input to estimateSummary and other summary functions.

Value

An object resembling the output from run.scenarios but with transformed output. The outputtype and class of the object are changed to match ‘outputtype’.

See Also

run.scenarios, estimateSummary, outputtype<-

secrdesign documentation built on April 3, 2025, 9:28 p.m.