networkdistance: Network Distances

In secrlinear: Spatially Explicit Capture-Recapture for Linear Habitats

Network Distances

Description

Simple network computation of distance between points along linear landscape features (e.g. rivers).

Usage

networkdistance(xy1, xy2, geometry)

Arguments

xy1	2-column matrix or dataframe
xy2	2-column matrix or dataframe
geometry	‘linearmask’ object

Details

networkdistance computes the distance in metres between the points in xy1 and the points in xy2. The geometry is a linearmask; if it is missing then it takes the value of xy2, which then of course must be a full linearmask. A network is taken from the ‘graph’ attribute of geometry or (if necessary) constructed from the linearmask ‘on the fly’, joining any points closer than (spacingfactor x spacing(geometry)). Points in xy1 and xy2 are first snapped to the nearest point in geometry. The computed distance is the sum of the graph's edge weights along the shortest path joining two points.

The commonest use of networkdistance is to calculate distances between detectors (traps) and points on a linear mask. In this case it is sufficient to provide two arguments only, as xy2 serves as both destination and geometry.

networkdistance meets the requirements for a user-defined distance function (userdist) in secr. No parameter is estimated.

Use showpath to check network distances interactively.

Value

networkdistance –

given k detectors and m mask points, a k x m matrix of distances.

If called with no arguments networkdistance returns a zero-length character vector.

See Also

read.linearmask, showpath, asgraph

Examples

x <- seq(0, 4*pi, length = 200)
xy <- data.frame(x = x*100, y = sin(x)*300)
mask <- read.linearmask(data = xy, spacing = 20)
trps <- make.line(mask, n = 15, startbuffer = 1000, by = 30)

## networkdistance; geometry in 'mask'
d <- networkdistance (trps, mask, mask)
dim(d)
head(d)

secrlinear documentation built on Oct. 22, 2024, 9:08 a.m.