factorize: Add factors to 'secuTrialdata' objects

In secuTrialR: Handling of Data from the Clinical Data Management System 'secuTrial'

Add factors to secuTrialdata objects

Description

secuTrial can return a codebook of codes and labels for categorical variables, including lookup type variables, if this option is selected in the export tool ('reference values as separate table'). This allows factors to be easily created. Factorize methods exist for secuTrialdata objects, data.frames, integers and logicals, but the intent is that only the former be used by users. The other methods could be used with customized codebooks.

Usage

factorize_secuTrial(object, ...)

## S3 method for class 'secuTrialdata'
factorize_secuTrial(object, ...)

Arguments

object	secuTrialdata object with additional factor variables in study forms containing categorical data
...	further parameters

Details

factorize_secuTrial will return an error if the appropriate codebook is not available.

Value

factorized secuTrialdata object

Examples

# load secuTrial export with separate reference table
sT_export <- read_secuTrial_raw(system.file("extdata", "sT_exports", "lnames",
                                            "s_export_CSV-xls_CTU05_long_ref_miss_en_utf8.zip",
                                            package = "secuTrialR"))
# factorize the secuTrialdata object
sT_export_factorized <- factorize_secuTrial(sT_export)

secuTrialR documentation built on March 7, 2023, 5:35 p.m.