API for seeker
Simplified Fetching and Processing of Microarray and RNA-Seq Data
| Global functions | |
|---|---|
| addToProfile | Source code |
| checkCommand | Source code |
| checkDefaultCommands | Man page Source code |
| checkParallel | Source code |
| checkSeekerArgs | Source code |
| checkSeekerArrayArgs | Source code |
| fastqc | Man page Source code |
| fastqscreen | Man page Source code |
| fetch | Man page Source code |
| fetchMetadata | Man page Source code |
| getAeMetadata | Source code |
| getCdfname | Source code |
| getCommandVersion | Source code |
| getEntrezEnsemblMapping | Source code |
| getFastqcFilenames | Source code |
| getFileList | Source code |
| getFileVec | Source code |
| getLogPath | Source code |
| getNaiveEsetAe | Source code |
| getNaiveEsetGeo | Source code |
| getNaiveEsetLocal | Source code |
| getNewEmatColnames | Source code |
| getPlatforms | Man page Source code |
| getProbeGeneMapping | Source code |
| getProbeGeneMappingAnno | Source code |
| getProbeGeneMappingDirect | Source code |
| getRCondaInfo | Source code |
| getRefgenieGenomes | Source code |
| getSalmonMetadata | Man page Source code |
| getSysDeps | Source code |
| getTrimmedFilenames | Source code |
| getTx2gene | Man page Source code |
| installCustomCdfPackages | Man page Source code |
| installMiniconda | Source code |
| installSraToolkit | Source code |
| installSysDeps | Man page Source code |
| multiqc | Man page Source code |
| safe | Source code |
| salmon | Man page Source code |
| seeker | Man page Source code |
| seekerArray | Man page Source code |
| seekerRma | Source code |
| setRefgenie | Source code |
| stripFileExt | Source code |
| system3 | Source code |
| trimgalore | Man page Source code |
| tximport | Man page Source code |
| validateCommand | Source code |
| writeLogFile | Source code |
