multiqc: Run MultiQC

In seeker: Simplified Fetching and Processing of Microarray and RNA-Seq Data

Run MultiQC

Description

This function calls multiqc using system2().

Usage

multiqc(
  parentDir = ".",
  outputDir = "multiqc_output",
  cmd = "multiqc",
  args = NULL
)

Arguments

parentDir	Directory that contains output to be aggregated.
outputDir	Directory in which to store output. Will be created if it doesn't exist.
cmd	Name or path of the command-line interface.
args	Additional arguments to pass to the command-line interface.

Value

An exit code, invisibly.

See Also

seeker()

seeker documentation built on Sept. 11, 2024, 7:54 p.m.