Man pages for seeker
Simplified Fetching and Processing of Microarray and RNA-Seq Data
| checkDefaultCommands | Check for presence of command-line interfaces |
| fastqc | Run FastQC |
| fastqscreen | Run FastQ Screen |
| fetch | Fetch files |
| fetchMetadata | Fetch metadata for a genomic study |
| getPlatforms | Get supported microarray platforms |
| getSalmonMetadata | Aggregrate metadata from salmon quantifications |
| getTx2gene | Get mapping between transcripts and genes |
| installCustomCdfPackages | Install custom CDF packages |
| installSysDeps | Install seeker's system dependencies |
| multiqc | Run MultiQC |
| salmon | Run Salmon |
| seeker | Process RNA-seq data end to end |
| seekerArray | Process microarray data end to end |
| trimgalore | Run Trim Galore! |
| tximport | Run tximport on RNA-seq quantifications |
