ash | 'asinh' data transformation |
backtrace | Back-tracing step of the 'segmenTier' algorithm. |
calculateScore | segmenTier's core dynamic programming routine in Rcpp |
clusterCor_c | Calculates position-cluster correlations for scoring function... |
clusterTimeseries | Cluster a processed time-series with k-means. |
colorClusters | Assign colors to clusters. |
flowclusterTimeseries | Cluster a processed time-series with 'flowClust' &... |
log_1 | log transformation handling zeros by adding 1 |
logLik.kmeans | Experimental: AIC/BIC for kmeans |
myPearson | Pearson product-moment correlation coefficient |
plot.clustering | Plot method for the "clustering" object. |
plotdev | Switch between plot devices. |
plotSegmentation | Summary plot for the 'segmenTier' pipeline. |
plot.segments | Plot method for the "segments" object. |
plot.timeseries | Plot method for the "timeseries" object. |
print.segments | Print method for segmentation result from 'segmentClusters'. |
processTimeseries | Process a time-series for clustering and segmentation. |
segmentCluster.batch | Batch wrapper for 'segmentClusters'. |
segmentClusters | Run the 'segmenTier' algorithm. |
segmenTier | segmenTier : cluster-based segmentation from a sequential... |
setVarySettings | Parameters for 'segmentCluster.batch'. |
sortClusters | Sort clusters by similarity. |
tsd | Transcriptome time-series from budding yeast. |
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