| beta_bounds | Bounds on the distortion at simplex loci caused by double... |
| chisq_g | Chi Square test when genotypes are known |
| chisq_gl | Chi-Sq for GL |
| drbounds | Upper bounds on double reduction rates. |
| em_li | EM algorithm from Li (2011) |
| gamfreq | Gamete frequencies under a generalized model |
| gcount_to_gvec | Converts genotype counts to genotype vectors. |
| gf_freq | Genotype frequencies of an F1 population under a generalized... |
| gvec_to_gcount | Inverse function of 'gcount_to_gvec()'. |
| is_valid_2 | Tests if the two parameter model is valid |
| iter.array | Iterator over array |
| like_gknown_2 | Likelihood under three parameter model when genotypes are... |
| like_gknown_3 | Likelihood under three parameter model when genotypes are... |
| like_glpknown_2 | Likelihood under three parameter model when using offspring... |
| like_glpknown_3 | Likelihood under three parameter model when using offspring... |
| llike_li | Objective function for 'em_li()' |
| lrt_men_g4 | Likelihood ratio test for segregation distortion with known... |
| lrt_men_gl4 | Likelihood ratio test using genotype likelihoods. |
| multidog_to_g | Converts multidog output to a format usable for seg_multi()... |
| multi_lrt | Parallelized likelihood ratio test for segregation... |
| nextElem.arrayiter | Next element in an array |
| n_pp_mix | Number of mixture components |
| offspring_geno | Simulates genotypes given genotype frequencies. |
| offspring_gf_2 | Calculates offspring genotype frequencies under the... |
| offspring_gf_3 | Calculates offspring genotype frequencies under the... |
| otest_g | Jointly tests for segregation distortion and number of... |
| po_gl | Generate genotype likelihoods from offspring genotypes. |
| polymapr_test | Run segregation distortion tests as implemented in the... |
| pvec_tet_2 | Tetraploid gamete frequencies of gametes when one parent's... |
| pvec_tet_3 | Tetraploid gamete frequencies of gametes when one parent's... |
| seg | Disomic and polysomic segregation patterns |
| seg_lrt | Test for segregation distortion in a polyploid F1 population. |
| seg_multi | Parallelized likelihood ratio test for segregation distortion... |
| segtest-package | segtest: Tests for Segregation Distortion in Polyploids |
| simf1g | Simulate genotype counts from F1 individuals |
| simf1gl | Simulate genotype likelihoods of F1 individuals. |
| simgl | Simulate genotype (log) likelihoods from genotype counts |
| three_to_two | Convert from three parameters to two parameters |
| ufit | Genotype data from Cappai et al. (2020) |
