A probability tree allows to compute probabilities of complex events, such as genotype probabilities in intermediate generations of inbreeding through recurrent self-fertilization (selfing). This package implements functionality to compute probability trees for two- and three-marker genotypes in the F2 to F7 selfing generations. The conditional probabilities are derived automatically and in symbolic form. The package also provides functionality to extract and evaluate the relevant probabilities.

Author | Frank Technow [aut, cre] (Pioneer Hi-Bred International, Inc., Johnston, Iowa) |

Date of publication | 2014-12-18 17:31:18 |

Maintainer | Frank Technow <Frank.Technow@pioneer.com> |

License | BSD_3_clause + file LICENSE |

Version | 0.2 |

**buildSelfingTree:** Builds the probability tree

**evalProb:** Evaluates the genotype probability

**extractProbs:** Extracts conditional genotype probabilities

**F4:** Genotypes of one million simulated F4 lines.

**genSubtree:** Generates a sub-tree

**getTargets:** Obtain all possible genotypes that match a certain target...

**haploProb:** Probability of observing the target haplotype given the...

**map:** Genetic map of the three markers in the F4 data set.

**nodeProbabilities:** Multiplies conditional probabilities along all branches of...

**selfingTree-package:** Genotype Probabilities in Intermediate Generations of...

selfingTree

selfingTree/NAMESPACE

selfingTree/data

selfingTree/data/map.RData

selfingTree/data/datalist

selfingTree/data/F4.RData

selfingTree/R

selfingTree/R/evalProb.R
selfingTree/R/genSubtree.R
selfingTree/R/getTargets.R
selfingTree/R/nodeProbabilities.R
selfingTree/R/haploProb.R
selfingTree/R/buildSelfingTree.R
selfingTree/R/extractProbs.R
selfingTree/MD5

selfingTree/DESCRIPTION

selfingTree/man

selfingTree/man/getTargets.Rd
selfingTree/man/evalProb.Rd
selfingTree/man/map.Rd
selfingTree/man/selfingTree-package.Rd
selfingTree/man/nodeProbabilities.Rd
selfingTree/man/haploProb.Rd
selfingTree/man/genSubtree.Rd
selfingTree/man/F4.Rd
selfingTree/man/extractProbs.Rd
selfingTree/man/buildSelfingTree.Rd
selfingTree/LICENSE

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