Files in seqR
Fast and Comprehensive K-Mer Counting Package
configure
MD5
README.md
NAMESPACE
configure.ac
DESCRIPTION
cleanup
R/RcppExports.R
R/seqR_result.R
R/kmer_functions_provider.R
R/count_multimers.R
R/common.R
R/count_kmers.R
R/kmer_typed_functions.R
R/package.R
R/zzz.R
R/CsgA.R
R/atomic_validators.R
src/Makevars.win
src/kmer_strings_creator.h
src/kmer_task_config.h
src/RcppExports.cpp
src/common_config.h
src/kmer_manager.h
src/contiguous_kmer_counter.h
src/gapped_kmer_counter.h
src/kmer_task_param_dispatcher.h
src/utils.h
src/proxy_contiguous_kmers.h
src/proxy_merge_kmer_results.h
src/Makevars.in
src/proxy.cpp
src/kmer_task_solver.h
src/user_params.h
src/proxy_gapped_kmers.h
src/kmer_counting_result.h
src/count_kmers_specific/count_kmers_string_list.h
src/count_kmers_specific/count_kmers_string_vector.h
src/count_kmers_specific/count_kmers_specific.h
src/count_kmers_specific/encoded_sequence/encoded_sequence_proxy.h
src/count_kmers_specific/encoded_sequence/raw_encoded_sequences_list.h
src/hash/custom_vector_hasher.h
src/hash/prefix_sequence_polynomial_hasher.h
src/hash/polynomial_single_hasher.h
src/hash/rolling_window.h
src/hash/single_hasher.h
src/hash/globals.h
src/hash/complex_hasher.h
inst/CITATION
inst/WORDLIST
inst/doc/features-overview.R
inst/doc/features-overview.Rmd
inst/doc/features-overview.html
inst/thirdparty/dictionaries/robin_hood_martinus.h
build/vignette.rds
tests/testthat.R
tests/spelling.R
tests/testthat/test_rbind_res.R
tests/testthat/test_count_kmers_string_vector.R
tests/testthat/test_count_kmers_proxy.R
tests/testthat/test_count_kmers_string_list_single_seq.R
tests/testthat/test_count_kmers_multiple_seq.R
tests/testthat/test_count_multimers.R
tests/testthat/test_count_kmers_multidim_hash.R
tests/testthat/test_count_gapped_kmers.R
tests/testthat/utils.R
vignettes/features-overview.Rmd
data/CsgA.rda
man/rbind_columnwise.Rd
man/count_multimers.Rd
man/count_kmers.Rd
man/CsgA.Rd
man/seqR-package.Rd
man/img/gapped_kmers_changing_the_first_contiguous_part.png
man/img/packages_different_seq_num.png
man/img/packages_different_k.png
man/img/convert.sh
man/img/gapped_kmers_changing_the_first_gap.png
