seqR-package: seqR: Fast and Comprehensive K-Mer Counting Package
In seqR: Fast and Comprehensive K-Mer Counting Package
Description
Author(s)
Examples
Description
The seqR package provides in-memory, probabilistic,
highly-optimized, and multi-threaded implementation of k-mer counting.
Author(s)
Jadwiga Słowik
Examples
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# Load exemplary sequences
data(CsgA)
# Counting 1-mers (amino acid composition)
count_kmers(
CsgA,
k = 1,
batch_size = 1)
# Counting 1-mers and 2-mers
count_multimers(
CsgA,
k_vector = c(1, 2),
batch_size = 1)
seqR documentation built on Oct. 6, 2021, 1:10 a.m.
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Description Author(s) Examples
Description
The seqR package provides in-memory, probabilistic,
highly-optimized, and multi-threaded implementation of k-mer counting.
Author(s)
Jadwiga Słowik
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | # Load exemplary sequences
data(CsgA)
# Counting 1-mers (amino acid composition)
count_kmers(
CsgA,
k = 1,
batch_size = 1)
# Counting 1-mers and 2-mers
count_multimers(
CsgA,
k_vector = c(1, 2),
batch_size = 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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