README.md

In seqhandbook: Miscellaneous Tools for Sequence Analysis

seqhandbook

Miscellaneous Tools for Sequence Analysis

This R package complements the handbook on sequence analysis "L'analyse statistique des trajectoires" (see references).

It provides the datasets used in the examples in the handbook, as well as functions for :

• describing episodes in individual sequences (at least one episode, number of episodes, position of the start of the first episode)
• measuring association between domains in multidimensional sequence analysis
• heat maps of sequence data
• Globally Interdependent Multidimensional Sequence Analysis (GIMSA)
• smoothing sequences for index plots
• coding sequences for Qualitative Harmonic Analysis
• measuring stress from MDS factors
• symmetrical PLS

installation

Execute the following code within R:

if (!require(devtools)){
    install.packages('devtools')
    library(devtools)
}
install_github("nicolas-robette/seqhandbook")

References

Robette, Nicolas. L'analyse statistique des trajectoires : Typologies de séquences et autres approches. Nouvelle édition [en ligne]. Paris : Ined Éditions, 2021. Disponible sur Internet : https://books.openedition.org/ined/16670. ISBN : 9782733290507. DOI : https://doi.org/10.4000/books.ined.16670.

seqhandbook documentation built on April 3, 2023, 5:45 p.m.