covid_cdr3: Adaptive COVID TCRB CDR3 data
In seqtrie: Radix Tree and Trie-Based String Distances
covid_cdr3 R Documentation
Adaptive COVID TCRB CDR3 data
Description
Unique TCRB CDR3 sequences from the Nolan et al. 2020. CDR3s were extracted via IgBLAST. The license for this data is Creative Commons Attribution 4.0 International License.
Usage
data(covid_cdr3)
Format
A character vector of length 133,034.
References
Nolan, Sean, et al. "A large-scale database of T-cell receptor beta (TCRB) sequences and binding associations from natural and synthetic exposure to SARS-CoV-2." (2020). doi: 10.21203/rs.3.rs-51964/v1.
Examples
data(covid_cdr3)
# Average CDR3 length
mean(nchar(covid_cdr3)) # [1] 43.56821
seqtrie documentation built on April 4, 2025, 5:08 a.m.
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| covid_cdr3 | R Documentation |
Adaptive COVID TCRB CDR3 data
Description
Unique TCRB CDR3 sequences from the Nolan et al. 2020. CDR3s were extracted via IgBLAST. The license for this data is Creative Commons Attribution 4.0 International License.
Usage
data(covid_cdr3)
Format
A character vector of length 133,034.
References
Nolan, Sean, et al. "A large-scale database of T-cell receptor beta (TCRB) sequences and binding associations from natural and synthetic exposure to SARS-CoV-2." (2020). doi: 10.21203/rs.3.rs-51964/v1.
Examples
data(covid_cdr3)
# Average CDR3 length
mean(nchar(covid_cdr3)) # [1] 43.56821
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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