dnaseq: An 'DnaSeq' example.

Description Usage Format Examples

Description

dnaseq is an example instance of an object of class DnaSeq. It has been generated by reading the aDnaSeq.fasta file (available in syste.file("extdata",package="sequences")) with the readFasta function.

Usage

1

Format

The format is: chr "dnaseq"

Examples

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3

Example output

Loading required package: Rcpp
This is package 'sequences'

Object of class DnaSeq 
 Id: example dna sequence 
 Length: 132 
 Alphabet: A C G T 
 Sequence: AGCATACGACGACTACGACACTACGACATCAGACACTACAGACTACTACGACTACAGACATCAGACACTACATATTTACATCATCAGAGATTATATTAACATCAGACATCGACACATCATCATCAGCATCAT 
> example dna sequence 
 1   AGCATACGA
10   CGACTACGAC
20   ACTACGACAT
30   CAGACACTAC
40   AGACTACTAC
50   GACTACAGAC
60   ATCAGACACT
70   ACATATTTAC
80   ATCATCAGAG
90   ATTATATTAA
100   CATCAGACAT
110   CGACACATCA
120   TCATCAGCAT
130   CAT

sequences documentation built on May 2, 2019, 6:45 a.m.