Man pages for serosv
Model Infectious Disease Parameters from Serosurveys
| compute_ci | Compute confidence interval |
| compute_ci.fp_model | Compute confidence interval for fractional polynomial model |
| compute_ci.lp_model | Compute confidence interval for local polynomial model |
| compute_ci.mixture_model | Compute confidence interval for mixture model |
| compute_ci.penalized_spline_model | Compute confidence interval for penalized_spline_model |
| compute_ci.weibull_model | Compute confidence interval for Weibull model |
| est_foi | Estimate force of infection |
| estimate_from_mixture | Estimate seroprevalence and foi by combining mixture model... |
| farrington_model | The Farrington (1990) model. |
| find_best_fp_powers | Returns the powers of the GLM fitted model which has the... |
| fp_model | A fractional polynomial model. |
| hav_be_1993_1994 | Hepatitis A serological data from Belgium in 1993 and 1994... |
| hav_be_2002 | Hepatitis A serological data from Belgium in 2002 (line... |
| hav_bg_1964 | Hepatitis A serological data from Bulgaria in 1964... |
| hbv_ru_1999 | Hepatitis B serological data from Russia in 1999 (aggregated) |
| hcv_be_2006 | Hepatitis C serological data from Belgium in 2006 (line... |
| hierarchical_bayesian_model | Hierarchical Bayesian Model |
| lp_model | A local polynomial model. |
| mixture_model | Fit a mixture model to classify serostatus |
| mseir_model | MSEIR model |
| mumps_uk_1986_1987 | Mumps serological data from the UK in 1986 and 1987... |
| parvob19_be_2001_2003 | Parvo B19 serological data from Belgium from 2001-2003 (line... |
| parvob19_ew_1996 | Parvo B19 serological data from England and Wales in 1996... |
| parvob19_fi_1997_1998 | Parvo B19 serological data from Finland from 1997-1998 (line... |
| parvob19_it_2003_2004 | Parvo B19 serological data from Italy from 2003-2004 (line... |
| parvob19_pl_1995_2004 | Parvo B19 serological data from Poland from 1995-2004 (line... |
| pava | Monotonize seroprevalence |
| penalized_spline_model | Penalized Spline model |
| plot.estimate_from_mixture | plot() overloading for result of estimate_from_mixture |
| plot.farrington_model | plot() overloading for Farrington model |
| plot.fp_model | plot() overloading for fractional polynomial model |
| plot_gcv | Plotting GCV values with respect to different nn-s and h-s... |
| plot.hierarchical_bayesian_model | plot() overloading for hierarchical_bayesian_model |
| plot.lp_model | plot() overloading for local polynomial model |
| plot.mixture_model | plot() overloading for mixture model |
| plot.mseir_model | plot() overloading for MSEIR model |
| plot.penalized_spline_model | plot() overloading for penalized spline |
| plot.polynomial_model | plot() overloading for polynomial model |
| plot.sir_basic_model | plot() overloading for SIR model |
| plot.sir_static_model | plot() overloading for SIR static model |
| plot.sir_subpops_model | plot() overloading for SIR sub populations model |
| plot.weibull_model | plot() overloading for Weibull model |
| polynomial_model | Polynomial models |
| rubella_mumps_uk | Rubella - Mumps data from the UK (aggregated) |
| rubella_uk_1986_1987 | Rubella serological data from the UK in 1986 and 1987... |
| serosv-package | serosv: model infectious disease parameters |
| set_plot_style | Helper to adjust styling of a plot |
| sir_basic_model | Basic SIR model |
| sir_static_model | SIR static model (age-heterogeneous, endemic equilibrium) |
| sir_subpops_model | SIR Model with Interacting Subpopulations |
| tb_nl_1966_1973 | Tuberculosis serological data from the Netherlands 1966-1973... |
| transform_data | Generate a dataframe with 't', 'pos' and 'tot' columns from... |
| vzv_be_1999_2000 | VZV serological data from Belgium (Flanders) from 1999-2000... |
| vzv_be_2001_2003 | VZV serological data from Belgium from 2001-2003 (line... |
| vzv_parvo_be | VZV and Parvovirus B19 serological data in Belgium (line... |
| weibull_model | The Weibull model. |
