mseir_model: MSEIR model

In serosv: Model Infectious Disease Parameters from Serosurveys

MSEIR model

Description

Refers to section 3.4.

Usage

mseir_model(a, gamma, lambda, sigma, nu)

Arguments

a	age sequence
gamma	time in maternal class.
lambda	time in susceptible class.
sigma	time in latent class.
nu	time in infected class.

Value

list of class mseir_model with the following parameters

parameters	list of parameters used for fitting the model
output	matrix of proportion for each compartment over time

Examples

model <- mseir_model(
  a=seq(from=1,to=20,length=500), # age range from 0 -> 20 yo
  gamma=1/0.5, # 6 months in the maternal antibodies
  lambda=0.2,  # 5 years in the susceptible class
  sigma=26.07, # 14 days in the latent class
  nu=36.5      # 10 days in the infected class
)
model

serosv documentation built on Oct. 18, 2024, 5:07 p.m.