reconstruct_algorithm: reconstruct_algorithm

In shar: Species-Habitat Associations

reconstruct_algorithm

Description

Pattern reconstruction (internal)

Usage

reconstruct_algorithm(
  pattern,
  method,
  n_random,
  e_threshold,
  max_runs,
  no_change,
  annealing,
  weights,
  r_length,
  r_max,
  stoyan,
  verbose,
  plot
)

Arguments

pattern	ppp object with pattern.
n_random	Integer with number of randomizations.
e_threshold	Double with minimum energy to stop reconstruction.
max_runs	Integer with maximum number of iterations if e_threshold is not reached.
no_change	Integer with number of iterations at which the reconstruction will stop if the energy does not decrease.
annealing	Double with probability to keep relocated point even if energy did not decrease.
weights	Vector with weights used to calculate energy. The first number refers to Gest(r), the second number to pcf(r).
r_length	Integer with number of intervals from r = 0 to r = rmax for which the summary functions are evaluated.
r_max	Double with maximum distance used during calculation of summary functions. If NULL, will be estimated from data.
stoyan	Coefficient for Stoyan's bandwidth selection rule.
verbose	Logical if progress report is printed.
plot	Logical if pcf(r) function is plotted and updated during optimization.

Value

list

shar documentation built on Oct. 23, 2023, 9:06 a.m.