FungusTreeNetwork: FungusTreeNetwork

In shinySbm: 'shiny' Application to Use the Stochastic Block Model

FungusTreeNetwork

Description

fungus-tree interaction network

This data set provides information about $154$ fungi sampled on $51$ tree species. Composed of nodes and edges lists build based on 'sbm' data package.

Usage

FungusTreeNetwork

Format

A list of the following entries:

networks

• tree_names: (character) tree names

• fungus_names: (character) fungus names

• tree_tree

  1. nodes: data.frame describing nodes of tree_tree network

  2. edges: data.frame describing edges of tree_tree network

  3. type: this network is "unipartite"

• fungus_tree

  1. nodes: data.frame describing nodes of fungus_tree network

  2. edges: data.frame describing edges of fungus_tree network

  3. type: this network is "bipartite"

sbmResults

• tree_treeResults of estimateSimpleSBM for sbm applied on tree_tree data with a Poisson model.

• fungus_treeResults of estimateBipartiteSBM for sbm applied on fungus_tree data with a Bernoulli model.

Source

Vacher, Corinne, Dominique Piou, and Marie-Laure Desprez-Loustau. "Architecture of an antagonistic tree/fungus network: the asymmetric influence of past evolutionary history." PloS one 3.3 (2008): e1740.

shinySbm documentation built on Sept. 8, 2023, 5:06 p.m.