simboot: Simultaneous Inference for Diversity Indices
Version 0.2-6

Provides estimation of simultaneous bootstrap and asymptotic confidence intervals for diversity indices, namely the Shannon and the Simpson index. Several pre--specified multiple comparison types are available to choose. Further user--defined contrast matrices are applicable. In addition, simboot estimates adjusted as well as unadjusted p--values for two of the three proposed bootstrap methods. Further simboot allows for comparing biological diversities of two or more groups while simultaneously testing a user-defined selection of Hill numbers of orders q, which are considered as appropriate and useful indices for measuring diversity.

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AuthorRalph Scherer, Philip Pallmann
Date of publication2017-03-14 14:21:10
MaintainerRalph Scherer <shearer.ra76@gmail.com>
LicenseGPL (>= 2)
Version0.2-6
URL https://github.com/shearer/simboot http://shearer.github.io/simboot/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("simboot")

Man pages

asht: Internal function for simultaneous asymptotic intervals
Bacteria: Relative Abundances of Soil Bacteria
Boutrp: Internal function
CCdrp: Internal function
contrMat: Contrast Matrices
corrmatgen: Internal function.
estShannon: Estimator for Shannon's index
estShannonf: Estimator for Shannon's index odered by a factorial variable...
estShannonWY: Estimator for Shannon's index row wise.
estSimpson: Estimator for Simpson's index
estSimpsonf: Estimator for Simpson's index odered by a factorial variable...
estThetaRow: Internal function
mcpHill: Multiplicity-adjusted p-values for comparing biodiversity via...
predatGM: Abundance data of predatory insects
rpht: Internal function for simultaneous bayesian bootstrap...
saproDipGM: Abundance data of Diptera with saprophagous larvae
sbdiv: Perform simultaneous confidence intervals or adjusted...
SCIrp: Internal function
simboot: Simultaneous inference for diversity indices.
Simpson: Internal function for Simpson estimator
tsht: Internal function for simultaenous bootstrap intervals
waldci: Internal function for Wald intervals
WYht: Internal function for simultaneous bootstrap confidence...

Functions

Bacteria Man page
Boutrp Man page Source code
CCdrp Man page Source code
SCIrp Man page Source code
Simpson Man page Source code
WYht Man page Source code
asht Man page Source code
contrMat Man page Source code
corrmatgen Man page Source code
estShannon Man page Source code
estShannonWY Man page Source code
estShannonf Man page Source code
estSimpson Man page Source code
estSimpsonf Man page Source code
estThetaRow Man page Source code
mcpHill Man page Source code
predatGM Man page
rpht Man page Source code
saproDipGM Man page
sbdiv Man page Source code
simboot Man page
simboot-package Man page
tsht Man page Source code
waldci Man page Source code

Files

NAMESPACE
NEWS
data
data/saproDipGM.rda
data/Bacteria.rda
data/predatGM.rda
R
R/estShannonWY.R
R/rpht.R
R/estShannonf.R
R/estShannon.R
R/corrmatgen.R
R/estThetaRow.R
R/contrMat.R
R/SCIrp.R
R/asht.R
R/mcpHill.R
R/sbdiv.R
R/Simpson.R
R/CCdrp.R
R/waldci.R
R/tsht.R
R/WYht.R
R/estSimpsonf.R
R/estSimpson.R
R/Boutrp.R
README.md
MD5
DESCRIPTION
man
man/corrmatgen.Rd
man/WYht.Rd
man/estSimpson.Rd
man/mcpHill.Rd
man/waldci.Rd
man/Simpson.Rd
man/saproDipGM.Rd
man/simboot.Rd
man/estThetaRow.Rd
man/asht.Rd
man/sbdiv.Rd
man/estShannonWY.Rd
man/predatGM.Rd
man/estShannon.Rd
man/contrMat.Rd
man/Bacteria.Rd
man/estShannonf.Rd
man/SCIrp.Rd
man/rpht.Rd
man/CCdrp.Rd
man/estSimpsonf.Rd
man/Boutrp.Rd
man/tsht.Rd
simboot documentation built on May 19, 2017, 10:09 p.m.