| coNetwork | Random perturbations of a reference network |
| data-cancer | Microarray data set for breast cancer |
| getNetwork | Network extraction from a SIMoNe run |
| plot.simone | Graphical representation of SIMoNe outputs |
| plot.simone.network | Graphical representation of a network |
| rNetwork | Simulation of (clustered) Gaussian networks |
| rTranscriptData | Simulation of artificial transcriptomic data |
| setOptions | Low-level options of a SIMoNe run |
| simone | SIMoNe algorithm for network inference |
| simone-internal | 'simone' internal functions |
| simone-package | Statistical Inference for MOdular NEtworks (SIMoNe) |
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