simone, a family of networks is
generated and one may want to pick one of them according to a given
criterion. This is the job handled by the
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output of a SIMoNe run (must be an object of class
either a character string (
a vector of character string or integers used to extract a
sub-part of the selected network, which can be more readable. When
Returns an object of class
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## load the breast cancer data set data(cancer) attach(cancer) ## launch SIMoNe on the full data set res <- simone(expr) ## the default selected network (at most p edges) plot(getNetwork(res)) ## a sub network on some 10 randomly selected genes plot(getNetwork(res,"BIC", nodes = sample(colnames(expr),10))) ## a network with a penalty corresponding to at most 40 edges plot(getNetwork(res, 40)) detach(cancer)
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