simulist: Simulate Disease Outbreak Line List and Contacts Data

Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.

Package overview README.md Age-stratified hospitalisation and death risks Age-structured population Design Principles for {simulist} Getting Started with {simulist} Reporting delays and right-truncation of line list data Time-varying case fatality risk Visualising simulated data Wrangling simulated outbreak data

Vignettes Man pages API and functions Files

Package details
Author	Joshua W. Lambert [aut, cre, cph] (<https://orcid.org/0000-0001-5218-3046>), Carmen Tamayo [aut] (<https://orcid.org/0000-0003-4184-2864>), Hugo Gruson [ctb, rev] (<https://orcid.org/0000-0002-4094-1476>), Pratik R. Gupte [ctb, rev] (<https://orcid.org/0000-0001-5294-7819>), Adam Kucharski [rev] (<https://orcid.org/0000-0001-8814-9421>), Chris Hartgerink [rev] (<https://orcid.org/0000-0003-1050-6809>), Sebastian Funk [ctb] (<https://orcid.org/0000-0002-2842-3406>), London School of Hygiene and Tropical Medicine, LSHTM [cph] (00a0jsq62)
Maintainer	Joshua W. Lambert <joshua.lambert@lshtm.ac.uk>
License	MIT + file LICENSE
Version	0.5.0
URL	https://github.com/epiverse-trace/simulist https://epiverse-trace.github.io/simulist/
Package repository	View on CRAN
Installation	Install the latest version of this package by entering the following in R: `install.packages("simulist")`