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simulist: Simulate Disease Outbreak Line List and Contacts Data
Tools to simulate realistic raw case data for an epidemic in the form of line lists and contacts using a branching process. Simulated outbreaks are parameterised with epidemiological parameters and can have age-structured populations, age-stratified hospitalisation and death risk and time-varying case fatality risk.
Getting started
Package overview
README.md
Age-stratified hospitalisation and death risks
Age-structured population
Design Principles for {simulist}
Getting Started with {simulist}
Reporting delays and right-truncation of line list data
Time-varying case fatality risk
Visualising simulated data
Wrangling simulated outbreak data
Browse package contents
Package details |
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| Author | Joshua W. Lambert [aut, cre, cph] (ORCID: <https://orcid.org/0000-0001-5218-3046>), Carmen Tamayo Cuartero [aut] (ORCID: <https://orcid.org/0000-0003-4184-2864>), Hugo Gruson [ctb, rev] (ORCID: <https://orcid.org/0000-0002-4094-1476>), Pratik R. Gupte [ctb, rev] (ORCID: <https://orcid.org/0000-0001-5294-7819>), Adam Kucharski [rev] (ORCID: <https://orcid.org/0000-0001-8814-9421>), Chris Hartgerink [rev] (ORCID: <https://orcid.org/0000-0003-1050-6809>), Sebastian Funk [ctb] (ORCID: <https://orcid.org/0000-0002-2842-3406>), London School of Hygiene and Tropical Medicine, LSHTM [cph] (ROR: <https://ror.org/00a0jsq62>) |
| Maintainer | Joshua W. Lambert <joshua.lambert@lshtm.ac.uk> |
| License | MIT + file LICENSE |
| Version | 0.6.0 |
| URL | https://github.com/epiverse-trace/simulist https://epiverse-trace.github.io/simulist/ |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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