SISUS: Stable Isotope Sourcing using Sampling

additional.linear.constraints | Additional Linear Constraints |

assign.variables | Assign variables from input file to variable names |

diag.panel.hist | define scatterplot diagonal formatting |

dirichlet.moments | Calculate the moments of the Dirichlet distribution given the... |

filename.clean | Clean up filenames, replacing spaces and bad characters with... |

get.data | Get data from Excel spreadsheet |

indy.mixture.isotope.mvn.sample | Strip out the samples associated with the current mixture |

isotope.mvn.sampling | Samples isotope values from the Multivariate Normal... |

mcmc.diagnostics | MCMC Diagnostics |

model.mass.balance.equation | Mass balance equations for converting isotope values to... |

model.mass.balance.equation.inverse | Inverse Mass balance equations for converting biomass sampled... |

numerical.summaries | Numerical summaries |

polytope.constraints | Polytope constraints (incorporates both Isotope and... |

polytope.multiple.samples | Defines linear constraints for each sample from the isotope... |

prior.on.p | Prior on the vector of source proportions, p, is defined by... |

progress.time | returns the time taken since the time started |

resample.dirichlet.p | Resamples weighted samples from the polytope from the... |

sample.from.polytope | CORE function to draw the samples from the polytope |

sisus-package | SISUS: Stable Isotope Sourcing using Sampling |

sisus.run | driver program for SISUS |

s.plot.convex.hull | Convex Hull plot |

s.plot.convex.hull.titles | outside titles Convex Hull matrix plot |

s.plot.marginal.histogram | Plot marginal histograms |

s.plot.scatterplot.sample | Scatterplot matrix |

s.plot.settings.begin.end | Plot settings for all plots |

write.Ab | write A matrix and b vector |

write.input | Write input values out to a file |

write.model.settings | Write model settings to the process log |

write.out | write directly to the screen |

write.progress | write progress to the screen |

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