Files in sjSDM
Scalable Joint Species Distribution Modeling
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/sjSDM.R
R/internalStructure.R
R/methods.R
R/installation_help.R
R/sjSDM_configs.R
R/simulation.R
R/anova.R
R/data.R
R/Rsquared.R
R/install.R
R/plot.R
R/importance.R
R/zzz.R
R/utils.R
R/sjSDM_cv.R
inst/CITATION
inst/doc/sjSDM_Introduction.html
inst/doc/sjSDM_Introduction.Rmd
inst/examples/sjSDM-example.R
inst/examples/eucalypts-example.R
inst/examples/predict-example.R
inst/examples/importance-example.R
inst/examples/sjSDM_cv-example.R
inst/examples/Anova-example.R
inst/examples/butterflies-example.R
inst/examples/plot.sjSDM-example.R
inst/python/README.md
inst/python/__init__.py
inst/python/setup.py
inst/python/LICENSE
inst/python/sjSDM_py.egg-info/SOURCES.txt
inst/python/sjSDM_py.egg-info/dependency_links.txt
inst/python/sjSDM_py.egg-info/top_level.txt
inst/python/sjSDM_py.egg-info/requires.txt
inst/python/sjSDM_py.egg-info/PKG-INFO
inst/python/tests/test_sjSDM.py
inst/python/tests/__init__.py
inst/python/tests/__pycache__/test_sjSDM.cpython-37-pytest-7.1.3.pyc
inst/python/tests/__pycache__/test_sjSDM.cpython-37-pytest-6.2.5.pyc
inst/python/tests/__pycache__/__init__.cpython-37.pyc
inst/python/tests/__pycache__/test_model_LVM.cpython-36-pytest-6.2.4.pyc
inst/python/tests/__pycache__/__init__.cpython-38.pyc
inst/python/tests/__pycache__/test_sjSDM.cpython-37-pytest-7.0.1.pyc
inst/python/tests/__pycache__/test_sjSDM.cpython-38-pytest-7.2.2.pyc
inst/python/tests/__pycache__/__init__.cpython-36.pyc
inst/python/tests/__pycache__/test_model_LVM.cpython-36-pytest-6.2.2.pyc
inst/python/tests/__pycache__/test_sjSDM.cpython-36-pytest-6.2.2.pyc
inst/python/tests/__pycache__/test_sjSDM.cpython-36-pytest-6.2.4.pyc
inst/python/dist/sjSDM_py-0.1.1.tar.gz
inst/python/dist/sjSDM_py-0.1.1-py2-none-any.whl
inst/python/__pycache__/__init__.cpython-37.pyc
inst/python/__pycache__/__init__.cpython-38.pyc
inst/python/__pycache__/__init__.cpython-36.pyc
inst/python/sjSDM_py/__init__.py
inst/python/sjSDM_py/dist_mvp.py
inst/python/sjSDM_py/optimizer.py
inst/python/sjSDM_py/utils_fa.py
inst/python/sjSDM_py/model_sjSDM.py
inst/python/sjSDM_py/__pycache__/__init__.cpython-39.pyc
inst/python/sjSDM_py/__pycache__/model_sjSDM.cpython-38.pyc
inst/python/sjSDM_py/__pycache__/__init__.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/utils_fa.cpython-310.pyc
inst/python/sjSDM_py/__pycache__/__init__.cpython-38.pyc
inst/python/sjSDM_py/__pycache__/dist_mvp.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/model_sjSDM.cpython-310.pyc
inst/python/sjSDM_py/__pycache__/utils_fa.cpython-39.pyc
inst/python/sjSDM_py/__pycache__/model_svi.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/__init__.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/optimizer.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/model_LVM.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/optimizer.cpython-310.pyc
inst/python/sjSDM_py/__pycache__/model_sjSDM.cpython-39.pyc
inst/python/sjSDM_py/__pycache__/dist_mvp.cpython-310.pyc
inst/python/sjSDM_py/__pycache__/dist_mvp.cpython-38.pyc
inst/python/sjSDM_py/__pycache__/model_sjSDM.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/optimizer.cpython-38.pyc
inst/python/sjSDM_py/__pycache__/utils_fa.cpython-38.pyc
inst/python/sjSDM_py/__pycache__/run.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/model_sjSDM.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/model_LVM.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/optimizer.cpython-39.pyc
inst/python/sjSDM_py/__pycache__/dist_mvp.cpython-39.pyc
inst/python/sjSDM_py/__pycache__/utils_fa.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/dist_mvp.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/optimizer.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/utils_fa.cpython-36.pyc
inst/python/sjSDM_py/__pycache__/model_svi.cpython-37.pyc
inst/python/sjSDM_py/__pycache__/__init__.cpython-310.pyc
build/vignette.rds
build/stage23.rdb
tests/testthat.R
tests/testthat/test-5-importance.R
tests/testthat/test-3-python_core.R
tests/testthat/test-2-sjSDM_cv.R
tests/testthat/test-1-anova.R
tests/testthat/test-6-examples.R
tests/testthat/test-7-plotsjSDM.R
tests/testthat/test-4-sjSDM.R
tests/testthat/utils.R
vignettes/jSDM-structure.png
vignettes/unnamed-chunk-17-1.png
vignettes/unnamed-chunk-15-1.png
vignettes/unnamed-chunk-13-1.png
vignettes/jSDM-ANOVA.png
vignettes/unnamed-chunk-18-1.png
vignettes/sjSDM_Introduction.Rmd
vignettes/unnamed-chunk-12-1.png
vignettes/sjSDM_Introduction.orig
vignettes/build.R
data/butterflies.rda
data/eucalypts.rda
man/plot.sjSDMimportance.Rd
man/residuals.sjSDM.Rd
man/install_diagnostic.Rd
man/installation_help.Rd
man/install_sjSDM.Rd
man/is_torch_available.Rd
man/plot.sjSDMinternalStructure.Rd
man/getCov.Rd
man/SGD.Rd
man/AdaBound.Rd
man/print.bioticStruct.Rd
man/Rsquared.Rd
man/plot.sjSDM.DNN.Rd
man/getCor.Rd
man/getWeights.Rd
man/new_image.Rd
man/DiffGrad.Rd
man/sjSDM.Rd
man/print.DNN.Rd
man/plot.sjSDM.Rd
man/eucalypts.Rd
man/DNN.Rd
man/print.sjSDMinternalStructure.Rd
man/RMSprop.Rd
man/print.linear.Rd
man/plotAssemblyEffects.Rd
man/print.sjSDM_cv.Rd
man/sjSDM_cv.Rd
man/summary.sjSDM.Rd
man/logLik.sjSDM.Rd
man/plot.sjSDManova.Rd
man/butterflies.Rd
man/update.sjSDM.Rd
man/coef.sjSDM.Rd
man/summary.sjSDManova.Rd
man/sjSDMControl.Rd
man/summary.sjSDM_cv.Rd
man/getImportance.Rd
man/generateSpatialEV.Rd
man/Adamax.Rd
man/print.sjSDMimportance.Rd
man/bioticStruct.Rd
man/simulate_SDM.Rd
man/check_module.Rd
man/importance.Rd
man/predict.sjSDM.Rd
man/madgrad.Rd
man/plot.sjSDM_cv.Rd
man/anova.sjSDM.Rd
man/print.sjSDM.Rd
man/checkModel.Rd
man/getSe.Rd
man/simulate.sjSDM.Rd
man/print.sjSDManova.Rd
man/linear.Rd
man/AccSGD.Rd
man/plotsjSDMcoef.Rd
man/setWeights.Rd
man/internalStructure.Rd
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-unnamed-chunk-7-1.png
