inst/examples/plot.sjSDM-example.R

In sjSDM: Scalable Joint Species Distribution Modeling

\dontrun{
library(sjSDM)
# simulate community:
com = simulate_SDM(env = 6L, species = 7L, sites = 100L)

# fit model:
model = sjSDM(Y = com$response,env = com$env_weights, iter = 2L, se = TRUE,
              verbose = FALSE) 

# normal plot
plot(model)

# colored by groups
species=c("sp1","sp2","sp3","sp4","sp5","sp6","sp7")
group=c("mammal","bird","fish","fish","mammal","amphibian","amphibian")
group = data.frame(species=species,group=group)

plot(model,group=group)
}