skatMeta: Efficient meta analysis for the SKAT test

Share:

Computes necessary information to meta analyze SKAT statistics in each individual cohort, and then performs the meta analysis.

Author
Arend Voorman, Jennifer Brody, Thomas Lumley
Date of publication
2013-06-04 08:07:42
Maintainer
Arend Voorman <voorma@uw.edu>
License
GPL (>= 2)
Version
1.4.3

View on CRAN

Man pages

burdenMeta
Combine burden tests from multiple cohorts
singlesnpMeta
Meta analyze single snp effects from multiple cohorts
skatCohort
Run SKAT on data from a single cohort.
skatCohortAdj
Run SKAT on data from a single cohort, conditional on...
skatExample
example Data for illustrating skatMeta
skatMeta
Combine SKAT analyses from one or more cohorts
skatOMeta
Combine SKAT-O analyses from one or more cohorts.
SNPInfo
Illumina HumanExome BeadChip SNP Information file

Files in this package

skatMeta
skatMeta/MD5
skatMeta/vignettes
skatMeta/vignettes/skatMeta.bbl
skatMeta/vignettes/skatMeta.Rnw
skatMeta/src
skatMeta/src/survproto.h
skatMeta/src/survS.h
skatMeta/src/dmatrix.c
skatMeta/src/coxsafe.c
skatMeta/src/coxfit6.c
skatMeta/src/chsolve2.c
skatMeta/src/cholesky2.c
skatMeta/src/chinv2.c
skatMeta/man
skatMeta/man/skatOMeta.Rd
skatMeta/man/skatMeta.Rd
skatMeta/man/skatExample.Rd
skatMeta/man/skatCohortAdj.Rd
skatMeta/man/skatCohort.Rd
skatMeta/man/singlesnpMeta.Rd
skatMeta/man/burdenMeta.Rd
skatMeta/man/SNPInfo.Rd
skatMeta/inst
skatMeta/inst/doc
skatMeta/inst/doc/skatMeta.pdf
skatMeta/inst/doc/skatMeta.Rnw
skatMeta/inst/doc/skatMeta.R
skatMeta/data
skatMeta/data/skatExample.rda
skatMeta/data/datalist
skatMeta/data/SNPInfo.rda
skatMeta/R
skatMeta/R/sparseBlockInv.R
skatMeta/R/skatOMeta.R
skatMeta/R/skatMeta.R
skatMeta/R/skatFamCohort.R
skatMeta/R/skatCoxCohort.R
skatMeta/R/skatCohort.R
skatMeta/R/singlesnpMeta.R
skatMeta/R/pchisqsum2.R
skatMeta/R/coxlr.fit.R
skatMeta/R/cohortAdjust.R
skatMeta/R/check_format_skat.R
skatMeta/R/c.skatCohort.R
skatMeta/R/burdenMeta.R
skatMeta/NAMESPACE
skatMeta/DESCRIPTION