Set of tools to find coherent patterns in microarray data using a Bayesian sparse latent factor model (Duarte and Mayrink 2015 - http://link.springer.com/chapter/10.1007%2F978-3-319-12454-4_15). Considerable effort has been put into making slfm fast and memory efficient, turning it an interesting alternative to simpler methods in terms of execution time. It implements versions of the SLFM using both type of mixtures: using a degenerate distribution or a very concentrated normal distribution for the spike part of the mixture. It also implements additional functions to help pre-process the data and fit the model for a large number of arrays.

Author | Joao Duarte and Vinicius Mayrink |

Date of publication | 2015-08-10 09:09:59 |

Maintainer | Joao Duarte <jdanielnd@gmail.com> |

License | GPL-2 |

Version | 0.2.2 |

https://github.com/jdanielnd/slfm |

slfm

slfm/src

slfm/src/Makevars

slfm/src/slfm_MNN.cpp

slfm/src/gibbs.cpp

slfm/src/slfm_MDN.cpp

slfm/src/Makevars.win

slfm/src/RcppExports.cpp

slfm/NAMESPACE

slfm/NEWS

slfm/R

slfm/R/process_matrix.r

slfm/R/plot_matrix.r

slfm/R/class_interval.r

slfm/R/RcppExports.R
slfm/R/slfm_list.r

slfm/R/slfm.r

slfm/R/slfm-package.r

slfm/MD5

slfm/DESCRIPTION

slfm/man

slfm/man/slfm_list.Rd
slfm/man/process_matrix.Rd
slfm/man/slfm-package.Rd
slfm/man/plot_matrix.Rd
slfm/man/slfm.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.