This package provides methods of fitting bivariate lines in allometry using the major axis (MA) or standardised major axis (SMA), and for making inferences about such lines. The available methods of inference include confidence intervals and one-sample tests for slope and elevation, testing for a common slope or elevation amongst several allometric lines, constructing a confidence interval for a common slope or elevation, and testing for no shift along a common axis, amongst several samples.

Author | David Warton <David.Warton@unsw.edu.au>, Remko Duursma, Daniel Falster and Sara Taskinen. |

Date of publication | 2014-01-07 00:49:08 |

Maintainer | Remko Duursma <remkoduursma@gmail.com> |

License | GPL-2 |

Version | 3.4-3 |

http://web.maths.unsw.edu.au/~dwarton, http://www.bitbucket.org/remkoduursma/smatr |

**alpha.fun:** Utility functions for robust fitting

**b.com.est:** Common slope estimation

**coef.sma:** Extract coefficients from a 'sma' or 'ma' fit

**com.ci:** Calculates a confidence inteval for a common slope (called by...

**elev.com:** Test for equal elevation among several lines fitted with...

**elev.test:** One-sample test of a (standardised) major axis elevation

**fitted.sma:** Returns fitted values

**leaflife:** Leaf longevity and leaf mass per area for plant species from...

**leafmeas:** Leaf mass per area and photosynthetic rate for plant species...

**line.cis:** Slope and elevation of a (standardised) major axis, with...

**lr.b.com:** Likelihood ratio statistic, assuming a common slope (called...

**makeLogMinor:** Generate spacing for minor tick marks on a plot with...

**meas.est:** Measurement error variance estimation from repeated measures

**multcompmatrix:** Multiple comparisons graphical matrix

**nicePlot:** Utility plotting functions

**plot.sma:** Draw an X-Y plot

**print.sma:** Print an object of class 'sma'.

**residuals.sma:** Extract model residuals

**seqLog:** Sequence Generation

**shift.com:** Test for no mean shift along a common (standardised) major...

**slope.com:** Common slope test amongst several allometric lines

**slope.test:** One-sample test of a (standardised) major axis slope

**sma:** (Standardized) major axis estimation and testing for one or...

**smatr-package:** (Standardised) Major Axis Estimation and Testing Routines

**summary.sma:** Print a summary

smatr

smatr/inst

smatr/inst/CITATION

smatr/NAMESPACE

smatr/data

smatr/data/leaflife.RData

smatr/data/leafmeas.RData

smatr/R

smatr/R/logLik_sma.R
smatr/R/b.com.est.R
smatr/R/alpha.fun.R
smatr/R/fitted.sma.R
smatr/R/lr.b.com.R
smatr/R/ma.R
smatr/R/slope.test.R
smatr/R/seqLog.R
smatr/R/shift.com.R
smatr/R/multcompmatrix.R
smatr/R/coef.sma.R
smatr/R/print.sma.R
smatr/R/sma.R
smatr/R/huber.M.R
smatr/R/residuals.sma.R
smatr/R/line.cis.R
smatr/R/elev.test.R
smatr/R/com.ci.R
smatr/R/elev.com.R
smatr/R/makeLogMinor.R
smatr/R/robust.factor.R
smatr/R/defineAxis.R
smatr/R/meas.est.R
smatr/R/summary.sma.R
smatr/R/slope.com.R
smatr/R/predict.sma.R
smatr/R/nicePlot.R
smatr/R/plot.sma.R
smatr/MD5

smatr/DESCRIPTION

smatr/man

smatr/man/slope.test.Rd
smatr/man/elev.test.Rd
smatr/man/smatr-package.Rd
smatr/man/meas.est.Rd
smatr/man/nicePlot.Rd
smatr/man/com.ci.Rd
smatr/man/summary.sma.Rd
smatr/man/seqLog.Rd
smatr/man/elev.com.Rd
smatr/man/alpha.fun.Rd
smatr/man/leaflife.Rd
smatr/man/lr.b.com.Rd
smatr/man/slope.com.Rd
smatr/man/multcompmatrix.Rd
smatr/man/fitted.sma.Rd
smatr/man/sma.Rd
smatr/man/coef.sma.Rd
smatr/man/print.sma.Rd
smatr/man/residuals.sma.Rd
smatr/man/makeLogMinor.Rd
smatr/man/shift.com.Rd
smatr/man/leafmeas.Rd
smatr/man/plot.sma.Rd
smatr/man/line.cis.Rd
smatr/man/b.com.est.Rd
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