Files in smer

Sparse Marginal Epistasis Test

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/sme.R R/hdf5_api.R R/simulate_traits.R R/catch-routine-registration.R R/approximate_memory_requirements.R R/getting_started.R

src/allocate_memory.h

src/simulate_traits.cpp

src/Makevars

src/read_phenotypes.cpp

src/sme.h

src/test-runner.cpp

src/read_genotypes.h

src/compute_covariance_q.cpp

src/read_genotype_mask.h

src/compute_mom_components.h

src/RcppExports.cpp

src/count_data.cpp

src/testing_utils.h

src/compute_covariance_q.h

src/compute_mom_components.cpp

src/testing_utils.cpp

src/read_phenotypes.h

src/initialize_random_vectors.cpp

src/count_data.h

src/set_metadata.h

src/mailman.h

src/computation.cpp

src/computation.h

src/sme.cpp

src/initialize_random_vectors.h

src/hdf5_api.cpp

src/read_covariates.cpp

src/read_genotypes.cpp

src/allocate_memory.cpp

src/genotype.h

src/genotype.cpp

src/read_covariates.h

src/check_openmp.cpp

src/read_genotype_mask.cpp

src/simulate_traits.h

src/set_metadata.cpp

inst/WORDLIST

inst/doc/study-erythroid-differentiation-data.Rmd

inst/doc/tutorial-cite-us.html

inst/doc/tutorial-memory-optimization.Rmd

inst/doc/tutorial-create-mask-file.html

inst/doc/tutorial-simulate-traits.Rmd inst/doc/tutorial-memory-optimization.R inst/doc/tutorial-cite-us.R inst/doc/smer.R inst/doc/study-erythroid-differentiation-data.R inst/doc/tutorial-create-mask-file.Rmd inst/doc/smer.Rmd

inst/doc/tutorial-simulate-traits.html

inst/doc/tutorial-create-mask-file.R inst/doc/tutorial-simulate-traits.R

inst/doc/smer.html

inst/doc/study-erythroid-differentiation-data.html

inst/doc/tutorial-memory-optimization.html

inst/doc/tutorial-cite-us.Rmd

inst/testdata/test_2.fam

inst/testdata/test.csv

inst/testdata/test.fam

inst/testdata/test.cov

inst/testdata/test.h5

inst/testdata/test.bim

inst/testdata/test_h2_0.5.pheno

inst/testdata/test_2.bed

inst/testdata/test.bed

inst/testdata/test_2.bim

inst/testdata/test_ld.h5

inst/testdata/allele_count_matrix.txt

build/vignette.rds

tests/testthat.R tests/testthat/test-simulate_traits.R tests/testthat/test-sme.R tests/testthat/test-hdf5_api.R vignettes/study-erythroid-differentiation-data.Rmd vignettes/tutorial-memory-optimization.Rmd vignettes/tutorial-simulate-traits.Rmd vignettes/tutorial-create-mask-file.Rmd vignettes/smer.Rmd vignettes/tutorial-cite-us.Rmd

data/getting_started.rda

man/read_hdf5_dataset.Rd man/sme.Rd man/simulate_traits.Rd man/getting_started.Rd man/approximate_memory_requirements.Rd man/write_hdf5_dataset.Rd man/create_hdf5_file.Rd

man/figures/logo.png

man/figures/sme-schematic-dhs.png

man/figures/README-logo.png

man/figures/sme-schematic-manhattan.png

man/figures/sme-runtime.png

man/figures/sme-shared-rvs.png

man/figures/dhs_manhattan.png

smer documentation built on Sept. 17, 2026, 5:08 p.m.