| abcRun | Run a set of simulations initialised with parameters sampled... |
| abcSmc | Run an ABC-SMC algorithm for infering the parameters of a... |
| astimedData | Convert a time series object to a timed data matrix |
| discretise | Discretise output from a discrete event simulation algorithm |
| gillespie | Simulate a sample path from a stochastic kinetic model... |
| gillespied | Simulate a sample path from a stochastic kinetic model... |
| imdeath | Simulate a sample path from the homogeneous immigration-death... |
| LVdata | Example simulated time courses from a stochastic... |
| mcmcSummary | Summarise and plot tabular MCMC output |
| metrop | Run a simple Metropolis sampler with standard normal target... |
| metropolisHastings | Run a Metropolis-Hastings MCMC algorithm for the parameters... |
| mytable | Simple example data frame |
| normgibbs | A simple Gibbs sampler for Bayesian inference for the mean... |
| pfMLLik | Create a function for computing the log of an unbiased... |
| pfMLLik1 | Create a function for computing the log of an unbiased... |
| rcfmc | Simulate a continuous time finite state space Markov chain |
| rdiff | Simulate a sample path from a univariate diffusion process |
| rfmc | Simulate a finite state space Markov chain |
| simpleEuler | Simulate a sample path from an ODE model |
| simSample | Simulate a many realisations of a model at a given fixed time... |
| simTimes | Simulate a model at a specified set of times, using a... |
| simTs | Simulate a model on a regular grid of times, using a function... |
| simTs1D | Simulate a model on a regular grid of times, using a function... |
| simTs2D | Simulate a model on a regular grid of times, using a function... |
| smfsb-package | Stochastic Modelling for Systems Biology |
| spnModels | Example SPN models |
| StepCLE | Create a function for advancing the state of an SPN by using... |
| StepCLE1D | Create a function for advancing the state of an SPN by using... |
| StepCLE2D | Create a function for advancing the state of an SPN by using... |
| StepEuler | Create a function for advancing the state of an ODE model by... |
| StepEulerSPN | Create a function for advancing the state of an SPN by using... |
| StepFRM | Create a function for advancing the state of an SPN by using... |
| StepGillespie | Create a function for advancing the state of an SPN by using... |
| StepGillespie1D | Create a function for advancing the state of an SPN by using... |
| StepGillespie2D | Create a function for advancing the state of an SPN by using... |
| stepLVc | A function for advancing the state of a Lotka-Volterra model... |
| StepODE | Create a function for advancing the state of an ODE model by... |
| StepPTS | Create a function for advancing the state of an SPN by using... |
| StepSDE | Create a function for advancing the state of an SDE model by... |
