abcRun | Run a set of simulations initialised with parameters sampled... |
abcSmc | Run an ABC-SMC algorithm for infering the parameters of a... |
astimedData | Convert a time series object to a timed data matrix |
discretise | Discretise output from a discrete event simulation algorithm |
gillespie | Simulate a sample path from a stochastic kinetic model... |
gillespied | Simulate a sample path from a stochastic kinetic model... |
imdeath | Simulate a sample path from the homogeneous immigration-death... |
LVdata | Example simulated time courses from a stochastic... |
mcmcSummary | Summarise and plot tabular MCMC output |
metrop | Run a simple Metropolis sampler with standard normal target... |
metropolisHastings | Run a Metropolis-Hastings MCMC algorithm for the parameters... |
mytable | Simple example data frame |
normgibbs | A simple Gibbs sampler for Bayesian inference for the mean... |
pfMLLik | Create a function for computing the log of an unbiased... |
pfMLLik1 | Create a function for computing the log of an unbiased... |
rcfmc | Simulate a continuous time finite state space Markov chain |
rdiff | Simulate a sample path from a univariate diffusion process |
rfmc | Simulate a finite state space Markov chain |
simpleEuler | Simulate a sample path from an ODE model |
simSample | Simulate a many realisations of a model at a given fixed time... |
simTimes | Simulate a model at a specified set of times, using a... |
simTs | Simulate a model on a regular grid of times, using a function... |
simTs1D | Simulate a model on a regular grid of times, using a function... |
simTs2D | Simulate a model on a regular grid of times, using a function... |
smfsb-package | Stochastic Modelling for Systems Biology |
spnModels | Example SPN models |
StepCLE | Create a function for advancing the state of an SPN by using... |
StepCLE1D | Create a function for advancing the state of an SPN by using... |
StepCLE2D | Create a function for advancing the state of an SPN by using... |
StepEuler | Create a function for advancing the state of an ODE model by... |
StepEulerSPN | Create a function for advancing the state of an SPN by using... |
StepFRM | Create a function for advancing the state of an SPN by using... |
StepGillespie | Create a function for advancing the state of an SPN by using... |
StepGillespie1D | Create a function for advancing the state of an SPN by using... |
StepGillespie2D | Create a function for advancing the state of an SPN by using... |
stepLVc | A function for advancing the state of a Lotka-Volterra model... |
StepODE | Create a function for advancing the state of an ODE model by... |
StepPTS | Create a function for advancing the state of an SPN by using... |
StepSDE | Create a function for advancing the state of an SDE model by... |
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