Man pages for smfsb
SMfSB 2e: Stochastic Modelling for Systems Biology, second edition

astimedDataConvert a time series object to a timed data matrix
discretiseDiscretise output from a discrete event simulation algorithm
gillespieSimulate a sample path from a stochastic kinetic model...
gillespiedSimulate a sample path from a stochastic kinetic model...
imdeathSimulate a sample path from the homogeneous immigration-death...
LVdataExample simulated time courses from a stochastic...
mcmcSummarySummarise and plot tabular MCMC output
metropRun a simple Metropolis sampler with standard normal target...
mytableSimple example data frame
normgibbsA simple Gibbs sampler for Bayesian inference for the mean...
pfMLLikCreate a function for computing the log of an unbiased...
rcfmcSimulate a continuous time finite state space Markov chain
rdiffSimulate a sample path from a univariate diffusion process
rfmcSimulate a finite state space Markov chain
simpleEulerSimulate a sample path from an ODE model
simSampleSimulate a many realisations of a model at a given fixed time...
simTimesSimulate a model at a specified set of times, using a...
simTsSimulate a model on a regular grid of times, using a function...
smfsb-packageStochastic Modelling for Systems Biology, second edition
spnModelsExample SPN models
StepCLECreate a function for advancing the state of an SPN by using...
StepEulerCreate a function for advancing the state of an ODE model by...
StepEulerSPNCreate a function for advancing the state of an SPN by using...
StepFRMCreate a function for advancing the state of an SPN by using...
StepGillespieCreate a function for advancing the state of an SPN by using...
stepLVcA function for advancing the state of a Lotka-Volterra model...
StepODECreate a function for advancing the state of an ODE model by...
StepPTSCreate a function for advancing the state of an SPN by using...
StepSDECreate a function for advancing the state of an SDE model by...
smfsb documentation built on May 30, 2017, 3:42 a.m.