get_incubation_day_distribution: Vector of day-specific probabilities of disease outbreak

In smidm: Statistical Modelling for Infectious Disease Management

Vector of day-specific probabilities of disease outbreak

Description

Creates a vector containing the probabilities of the disease outbreak for the days 1 to maxi after the infection.

Usage

get_incubation_day_distribution(max_days, meanlog = 1.69, sdlog = 0.55)

Arguments

max_days	Number, the maximum length of the incubation time, defined as number.
meanlog	Number, the parameter of mean from the log-normal distribution.
sdlog	Number, the parameter of sd from the log-normal distribution.

Details

meanlog and sdlog are the log-normal distribution parameters derived from the incubation period characteristics described in Xin et al. (2021).

Value

Vector of day-specific probabilities of disease outbreak.

References

Xin H, Wong JY, Murphy C et al. (2021) "The Incubation Period Distribution of Coronavirus Disease 2019: A Systematic Review and Meta-Analysis". Clinical Infectious Diseases, 73(12): 2344-2352.

Examples

get_incubation_day_distribution(10)
get_incubation_day_distribution(10, meanlog = 1.69, sdlog = 0.55)

smidm documentation built on Aug. 27, 2022, 9:06 a.m.