snplist: Tools to Create Gene Sets

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A set of functions to create SQL tables of gene and SNP information and compose them into a SNP Set, for example for use with the RSNPset package, or to export to a PLINK set.

Author
Chanhee Yi, Alexander Sibley, and Kouros Owzar
Date of publication
2016-10-28 00:02:15
Maintainer
Alexander Sibley <alexander.sibley@dm.duke.edu>
License
GPL-3
Version
0.16

View on CRAN

Man pages

exportPLINKSet
exportPLINKSet
getBioMartData
getBioMartData
makeGeneSet
makeGeneSet
setGeneTable
setGeneTable
setSNPTable
setSNPTable
snplist-package
Tools to Create Gene Sets

Files in this package

snplist
snplist/inst
snplist/inst/doc
snplist/inst/doc/snplist.Rnw
snplist/inst/doc/snplist.R
snplist/inst/doc/snplist.pdf
snplist/src
snplist/src/Makevars
snplist/src/exportPLINKSet.cpp
snplist/src/Makevars.win
snplist/NAMESPACE
snplist/NEWS
snplist/R
snplist/R/getBioMartData.R
snplist/R/makeGeneSet.R
snplist/R/exportPLINKSet.R
snplist/R/setSNPTable.R
snplist/R/setGeneTable.R
snplist/vignettes
snplist/vignettes/snplist.Rnw
snplist/MD5
snplist/build
snplist/build/vignette.rds
snplist/DESCRIPTION
snplist/man
snplist/man/makeGeneSet.Rd
snplist/man/setSNPTable.Rd
snplist/man/getBioMartData.Rd
snplist/man/snplist-package.Rd
snplist/man/setGeneTable.Rd
snplist/man/exportPLINKSet.Rd