Man pages for spOccupancy
Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
| fitted.intPGOcc | Extract Model Fitted Values for intPGOcc Object |
| fitted.lfJSDM | Extract Model Fitted Values for lfJSDM Object |
| fitted.lfMsPGOcc | Extract Model Fitted Values for lfMsPGOcc Object |
| fitted.msPGOcc | Extract Model Fitted Values for msPGOcc Object |
| fitted.PGOcc | Extract Model Fitted Values for PGOcc Object |
| fitted.sfJSDM | Extract Model Fitted Values for sfJSDM Object |
| fitted.sfMsPGOcc | Extract Model Fitted Values for sfMsPGOcc Object |
| fitted.spIntPGOcc | Extract Model Fitted Values for spIntPGOcc Object |
| fitted.spMsPGOcc | Extract Model Fitted Values for spMsPGOcc Object |
| fitted.spPGOcc | Extract Model Fitted Values for spPGOcc Object |
| fitted.stIntPGOcc | Extract Model Fitted Values for stIntPGOcc Object |
| fitted.stMsPGOcc | Extract Model Fitted Values for stMsPGOcc Object |
| fitted.stPGOcc | Extract Model Fitted Values for stPGOcc Object |
| fitted.svcMsPGOcc | Extract Model Fitted Values for svcMsPGOcc Object |
| fitted.svcPGBinom | Extract Model Fitted Values for svcPGBinom Object |
| fitted.svcPGOcc | Extract Model Fitted Values for svcPGOcc Object |
| fitted.svcTIntPGOcc | Extract Model Fitted Values for svcTIntPGOcc Object |
| fitted.svcTMsPGOcc | Extract Model Fitted Values for svcTMsPGOcc Object |
| fitted.svcTPGBinom | Extract Model Fitted Values for svcTPGBinom Object |
| fitted.svcTPGOcc | Extract Model Fitted Values for svcTPGOcc Object |
| fitted.tIntPGOcc | Extract Model Fitted Values for tIntPGOcc Object |
| fitted.tMsPGOcc | Extract Model Fitted Values for tMsPGOcc Object |
| fitted.tPGOcc | Extract Model Fitted Values for tPGOcc Object |
| getSVCSamples | Extract spatially-varying coefficient MCMC samples |
| hbef2015.rda | Detection-nondetection data of 12 foliage gleaning bird... |
| hbefElev.rda | Elevation in meters extracted at a 30m resolution across the... |
| hbefTrends.rda | Detection-nondetection data of 12 foliage gleaning bird... |
| intMsPGOcc | Function for Fitting Integrated Multi-Species Occupancy... |
| intPGOcc | Function for Fitting Single-Species Integrated Occupancy... |
| lfJSDM | Function for Fitting a Latent Factor Joint Species... |
| lfMsPGOcc | Function for Fitting Latent Factor Multi-Species Occupancy... |
| msPGOcc | Function for Fitting Multi-Species Occupancy Models Using... |
| neon2015.rda | Detection-nondetection data of 12 foliage gleaning bird... |
| PGOcc | Function for Fitting Single-Species Occupancy Models Using... |
| postHocLM | Function for Fitting Linear Mixed Models with Previous Model... |
| ppcOcc | Function for performing posterior predictive checks |
| predict.intMsPGOcc | Function for prediction at new locations for integrated... |
| predict.intPGOcc | Function for prediction at new locations for single-species... |
| predict.lfJSDM | Function for prediction at new locations for latent factor... |
| predict.lfMsPGOcc | Function for prediction at new locations for latent factor... |
| predict.msPGOcc | Function for prediction at new locations for multi-species... |
| predict.PGOcc | Function for prediction at new locations for single-species... |
| predict.sfJSDM | Function for prediction at new locations for spatial factor... |
| predict.sfMsPGOcc | Function for prediction at new locations for spatial factor... |
| predict.spIntPGOcc | Function for prediction at new locations for single-species... |
| predict.spMsPGOcc | Function for prediction at new locations for multi-species... |
| predict.spPGOcc | Function for prediction at new locations for single-species... |
| predict.stIntPGOcc | Function for prediction at new locations for multi-season... |
| predict.stMsPGOcc | Function for prediction at new locations for multi-season... |
| predict.stPGOcc | Function for prediction at new locations for multi-season... |
| predict.svcMsPGOcc | Function for prediction at new locations for spatially... |
| predict.svcPGBinom | Function for prediction at new locations for single-species... |
| predict.svcPGOcc | Function for prediction at new locations for single-species... |
| predict.svcTIntPGOcc | Function for prediction at new locations for multi-season... |
| predict.svcTMsPGOcc | Function for prediction at new locations for multi-season... |
| predict.svcTPGBinom | Function for prediction at new locations for multi-season... |
| predict.svcTPGOcc | Function for prediction at new locations for multi-season... |
| predict.tIntPGOcc | Function for prediction at new locations for multi-season... |
| predict.tMsPGOcc | Function for prediction at new locations for multi-season... |
| predict.tPGOcc | Function for prediction at new locations for multi-season... |
| residuals.PGOcc | Occupancy and detection residuals for 'PGOcc' models |
| residuals.spPGOcc | Occupancy and detection residuals for 'spPGOcc' models |
| residuals.svcPGOcc | Occupancy and detection residuals for 'svcPGOcc' models |
| sfJSDM | Function for Fitting a Spatial Factor Joint Species... |
| sfMsPGOcc | Function for Fitting Spatial Factor Multi-Species Occupancy... |
| simBinom | Simulate Single-Species Binomial Data |
| simIntMsOcc | Simulate Multi-Species Detection-Nondetection Data from... |
| simIntOcc | Simulate Single-Species Detection-Nondetection Data from... |
| simMsOcc | Simulate Multi-Species Detection-Nondetection Data |
| simOcc | Simulate Single-Species Detection-Nondetection Data |
| simTBinom | Simulate Multi-Season Single-Species Binomial Data |
| simTIntOcc | Simulate Single-Species Multi-Season Detection-Nondetection... |
| simTMsOcc | Simulate Multi-Species Multi-Season Detection-Nondetection... |
| simTOcc | Simulate Multi-Season Single-Species Detection-Nondetection... |
| spIntPGOcc | Function for Fitting Single-Species Integrated Spatial... |
| spMsPGOcc | Function for Fitting Multi-Species Spatial Occupancy Models... |
| spOccupancy-package | Single-Species, Multi-Species, and Integrated Spatial... |
| spPGOcc | Function for Fitting Single-Species Spatial Occupancy Models... |
| stIntPGOcc | Function for Fitting Multi-Season Single-Species Spatial... |
| stMsPGOcc | Function for Fitting Multi-Species Multi-Season Spatial... |
| stPGOcc | Function for Fitting Multi-Season Single-Species Spatial... |
| summary.intMsPGOcc | Methods for intMsPGOcc Object |
| summary.intPGOcc | Methods for intPGOcc Object |
| summary.lfJSDM | Methods for lfJSDM Object |
| summary.lfMsPGOcc | Methods for lfMsPGOcc Object |
| summary.msPGOcc | Methods for msPGOcc Object |
| summary.PGOcc | Methods for PGOcc Object |
| summary.postHocLM | Methods for postHocLM Object |
| summary.ppcOcc | Methods for ppcOcc Object |
| summary.sfJSDM | Methods for sfJSDM Object |
| summary.sfMsPGOcc | Methods for sfMsPGOcc Object |
| summary.spIntPGOcc | Methods for spIntPGOcc Object |
| summary.spMsPGOcc | Methods for spMsPGOcc Object |
| summary.spPGOcc | Methods for spPGOcc Object |
| summary.stIntPGOcc | Methods for stIntPGOcc Object |
| summary.stMsPGOcc | Methods for stMsPGOcc Object |
| summary.stPGOcc | Methods for stPGOcc Object |
| summary.svcMsPGOcc | Methods for svcMsPGOcc Object |
| summary.svcPGBinom | Methods for svcPGBinom Object |
| summary.svcPGOcc | Methods for svcPGOcc Object |
| summary.svcTIntPGOcc | Methods for svcTIntPGOcc Object |
| summary.svcTMsPGOcc | Methods for svcTMsPGOcc Object |
| summary.svcTPGBinom | Methods for svcTPGBinom Object |
| summary.svcTPGOcc | Methods for svcTPGOcc Object |
| summary.tIntPGOcc | Methods for tIntPGOcc Object |
| summary.tMsPGOcc | Methods for tMsPGOcc Object |
| summary.tPGOcc | Methods for tPGOcc Object |
| svcMsPGOcc | Function for Fitting Multi-Species Spatially-Varying... |
| svcPGBinom | Function for Fitting Single-Species Spatially-Varying... |
| svcPGOcc | Function for Fitting Single-Species Spatially-Varying... |
| svcTIntPGOcc | Function for Fitting Multi-Season Single-Species... |
| svcTMsPGOcc | Function for Fitting Multi-Species Multi-Season... |
| svcTPGBinom | Function for Fitting Multi-Season Single-Species... |
| svcTPGOcc | Function for Fitting Multi-Season Single-Species... |
| tIntPGOcc | Function for Fitting Multi-Season Single-Species Integrated... |
| tMsPGOcc | Function for Fitting Multi-Species Multi-Season Occupancy... |
| tPGOcc | Function for Fitting Multi-Season Single-Species Occupancy... |
| updateMCMC | Update a spOccupancy or spAbundance model run with more MCMC... |
| waicOcc | Compute Widely Applicable Information Criterion for... |
