X: Genotype matrix

In sparseSEM: Sparse-aware Maximum Likelihood for Structural Equation Models

Description

X is the M by N matrix corresponding to M cis-eQTL for M genes

Usage

data(X)

Format

The format is: int [1:30, 1:200] 2 1 3 1 2 3 2 1 2 2 ...

Details

current implementation only consider 1 eQTL per gene

References

1. Cai, X., Bazerque, J.A., and Giannakis, G.B. (2013). Inference of Gene Regulatory Networks with Sparse Structural Equation Models Exploiting Genetic Perturbations. PLoS Comput Biol 9, e1003068.
2. Huang A., Bazerque J. A., Giannakis G. B., DUroso G., Myers C. L., Cai X., Elastic Net algorithm for inferring gene regulatory networks based on structural equation models, to be submitted.

Examples

data(X)

sparseSEM documentation built on May 29, 2017, 8:29 p.m.