spatialEco: Spatial Analysis and Modelling

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Utilities to support spatial data manipulation, query, sampling and modelling. Functions include models for species population density, download utilities for climate and global deforestation spatial products, spatial smoothing, multivariate separability, point process model for creating pseudo- absences and sub-sampling, polygon and point-distance landscape metrics, auto-logistic model, sampling models, cluster optimization and statistical exploratory tools.

Author
Jeffrey S. Evans [aut, cre], Karthik Ram [ctb]
Date of publication
2016-06-15 00:24:54
Maintainer
Jeffrey S. Evans <jeffrey_evans@tnc.org>
License
GPL-3
Version
0.1-5
URLs

View on CRAN

Man pages

ants
Ant Biodiversity Data
bearing.distance
Bearing and Distance
breeding.density
Breeding density areas (aka, core habitat areas)
concordance
Concordance test for binomial models
conf.interval
Confidence interval for mean or median
correlogram
Correlogram
csi
Cosine Similarity Index
daymet.point
DAYMET point values
daymet.tiles
DAYMET Tile ID's
DAYMET_tiles
DAYMET climate tile index
dispersion
Dispersion (H-prime)
download.daymet
Download DAYMET
download.hansen
Download Hansen Forest 2000-2013 Change
download.prism
Download PRISM
effect.size
Cohen's-d effect size
gaussian.kernel
Gaussian Kernel
group.pdf
Probability density plot by group
hexagons
Hexagons
idw.smoothing
idw.smoothing
insert.values
Insert Values
kl.divergence
Kullback-Leibler divergence (relative entropy)
land.metrics
Landscape metrics for points and polygons
local.min.max
Local minimum and maximum
loess.boot
Loess Bootstrap
loess.ci
Loess with confidence intervals
logistic.regression
Logistic and Auto-logistic regression
moments
moments
mwCorr
Dutilleul moving window bivariate raster correlation
nni
Average Nearest Neighbour Index (NNI)
optimal.k
optimalK
o.ring
Inhomogeneous O-ring
outliers
Outliers
parea.sample
Percent area sample
plot.effect.size
Plot effect size
plot.loess.boot
Plot Loess Bootstrap
point.in.poly
Point and Polygon Intersect
polyPerimeter
Polygon perimeter
pp.subsample
Point process random subsample
print.effect.size
Print effect size
print.loess.boot
Print Loess bootstrap model
pseudo.absence
Pseudo-absence random samples
pu
Biodiversity Planning Units
rasterCorrelation
Raster correlation
raster.entropy
Raster Entropy
raster.vol
Raster Percent Volume
sample.annulus
Sample annulus
sample.line
Systematic or random point sample of line(s)
sample.poly
Sample Polygons
sampleTransect
Sample transect
se.news
spatialEco news
separability
separability
shannons
Shannon's Diversity (Entropy) Index
similarity
Ecological similarity
sp.na.omit
sp na.omit
stratified.random
Stratified random sample
summary.effect.size
Summarizing effect size
summary.loess.boot
Summarizing Loess bootstrap models
tpi
Topographic Position Index (tpi)
trend.line
trend.line
tri
Terrain Ruggedness Index
trig.trans
Calculates the trigonomic slope and aspect transformation
vrm
Vector Ruggedness Measure (VRM)
wt.centroid
Weighted centroid
zonal.stats
zonal.stats

Files in this package

spatialEco
spatialEco/inst
spatialEco/inst/CITATION
spatialEco/inst/NEWS
spatialEco/NAMESPACE
spatialEco/data
spatialEco/data/ants.rda
spatialEco/data/DAYMET_tiles.rda
spatialEco/data/pu.rda
spatialEco/R
spatialEco/R/daymet.point.R
spatialEco/R/summary.loess.boot.R
spatialEco/R/loess.ci.R
spatialEco/R/idw.smoothing.R
spatialEco/R/dispersion.R
spatialEco/R/print.effect.size.R
spatialEco/R/shannons.R
spatialEco/R/sample.poly.R
spatialEco/R/mwCorr.R
spatialEco/R/tpi.R
spatialEco/R/se.news.R
spatialEco/R/correlogram.R
spatialEco/R/gaussian.kernel.R
spatialEco/R/stratified.random.R
spatialEco/R/outliers.R
spatialEco/R/zonal.stats.R
spatialEco/R/trig.trans.R
spatialEco/R/csi.R
spatialEco/R/point.in.poly.R
spatialEco/R/sample.line.R
spatialEco/R/download.daymet.R
spatialEco/R/tri.R
spatialEco/R/optimal.k.R
spatialEco/R/local.min.max.R
spatialEco/R/concordance.R
spatialEco/R/DAYMET_tiles-data.R
spatialEco/R/moments.R
spatialEco/R/trend.line.R
spatialEco/R/parea.sample.R
spatialEco/R/insert.values.R
spatialEco/R/plot.effect.size.R
spatialEco/R/pp.subsample.R
spatialEco/R/nni.R
spatialEco/R/hexagons.R
spatialEco/R/separability.R
spatialEco/R/sp.na.omit.R
spatialEco/R/ants-data.R
spatialEco/R/summary.effect.size.R
spatialEco/R/vrm.R
spatialEco/R/conf.interval.R
spatialEco/R/print.loess.boot.R
spatialEco/R/kl.divergence.R
spatialEco/R/loess.boot.R
spatialEco/R/breeding.density.R
spatialEco/R/bearing.distance.R
spatialEco/R/sample.annulus.R
spatialEco/R/logistic.regression.R
spatialEco/R/download.hansen.R
spatialEco/R/download.prism.R
spatialEco/R/raster.entropy.R
spatialEco/R/pseudo.absence.R
spatialEco/R/effect.size.R
spatialEco/R/o.ring.R
spatialEco/R/raster.vol.R
spatialEco/R/rasterCorrelation.R
spatialEco/R/spatialEcoNews.R
spatialEco/R/plot.loess.boot.R
spatialEco/R/group.pdf.R
spatialEco/R/similarity.R
spatialEco/R/pu-data.R
spatialEco/R/daymet.tiles.R
spatialEco/R/wt.centroids.R
spatialEco/R/polyPerimeter.R
spatialEco/R/land.metrics.R
spatialEco/R/zzz.R
spatialEco/R/sample.transect.R
spatialEco/MD5
spatialEco/DESCRIPTION
spatialEco/man
spatialEco/man/kl.divergence.Rd
spatialEco/man/polyPerimeter.Rd
spatialEco/man/sample.poly.Rd
spatialEco/man/loess.ci.Rd
spatialEco/man/correlogram.Rd
spatialEco/man/download.daymet.Rd
spatialEco/man/pp.subsample.Rd
spatialEco/man/daymet.tiles.Rd
spatialEco/man/stratified.random.Rd
spatialEco/man/summary.loess.boot.Rd
spatialEco/man/summary.effect.size.Rd
spatialEco/man/bearing.distance.Rd
spatialEco/man/insert.values.Rd
spatialEco/man/shannons.Rd
spatialEco/man/hexagons.Rd
spatialEco/man/plot.loess.boot.Rd
spatialEco/man/pu.Rd
spatialEco/man/csi.Rd
spatialEco/man/similarity.Rd
spatialEco/man/plot.effect.size.Rd
spatialEco/man/vrm.Rd
spatialEco/man/download.hansen.Rd
spatialEco/man/parea.sample.Rd
spatialEco/man/point.in.poly.Rd
spatialEco/man/moments.Rd
spatialEco/man/group.pdf.Rd
spatialEco/man/nni.Rd
spatialEco/man/DAYMET_tiles.Rd
spatialEco/man/daymet.point.Rd
spatialEco/man/conf.interval.Rd
spatialEco/man/loess.boot.Rd
spatialEco/man/raster.entropy.Rd
spatialEco/man/effect.size.Rd
spatialEco/man/sample.annulus.Rd
spatialEco/man/optimal.k.Rd
spatialEco/man/raster.vol.Rd
spatialEco/man/rasterCorrelation.Rd
spatialEco/man/idw.smoothing.Rd
spatialEco/man/breeding.density.Rd
spatialEco/man/concordance.Rd
spatialEco/man/se.news.Rd
spatialEco/man/wt.centroid.Rd
spatialEco/man/sampleTransect.Rd
spatialEco/man/tri.Rd
spatialEco/man/local.min.max.Rd
spatialEco/man/sp.na.omit.Rd
spatialEco/man/separability.Rd
spatialEco/man/tpi.Rd
spatialEco/man/pseudo.absence.Rd
spatialEco/man/mwCorr.Rd
spatialEco/man/sample.line.Rd
spatialEco/man/logistic.regression.Rd
spatialEco/man/dispersion.Rd
spatialEco/man/gaussian.kernel.Rd
spatialEco/man/download.prism.Rd
spatialEco/man/print.effect.size.Rd
spatialEco/man/trend.line.Rd
spatialEco/man/zonal.stats.Rd
spatialEco/man/land.metrics.Rd
spatialEco/man/ants.Rd
spatialEco/man/o.ring.Rd
spatialEco/man/trig.trans.Rd
spatialEco/man/outliers.Rd
spatialEco/man/print.loess.boot.Rd