rStrauss: Perfect Simulation of the Strauss Process

In spatstat.random: Random Generation Functionality for the 'spatstat' Family

Perfect Simulation of the Strauss Process

Description

Generate a random pattern of points, a simulated realisation of the Strauss process, using a perfect simulation algorithm.

Usage

  rStrauss(beta, gamma = 1, R = 0, W = owin(), expand=TRUE, nsim=1, drop=TRUE)

Arguments

beta	intensity parameter (a positive number).
gamma	interaction parameter (a number between 0 and 1, inclusive).
R	interaction radius (a non-negative number).
W	window (object of class "owin") in which to generate the random pattern.
expand	Logical. If FALSE, simulation is performed in the window W, which must be rectangular. If TRUE (the default), simulation is performed on a larger window, and the result is clipped to the original window W. Alternatively expand can be an object of class "rmhexpand" (see rmhexpand) determining the expansion method.
nsim	Number of simulated realisations to be generated.
drop	Logical. If nsim=1 and drop=TRUE (the default), the result will be a point pattern, rather than a list containing a point pattern.

Details

This function generates a realisation of the Strauss point process in the window W using a ‘perfect simulation’ algorithm.

The Strauss process (Strauss, 1975; Kelly and Ripley, 1976) is a model for spatial inhibition, ranging from a strong ‘hard core’ inhibition to a completely random pattern according to the value of gamma.

The Strauss process with interaction radius R and parameters \beta and \gamma is the pairwise interaction point process with probability density

f(x_1,\ldots,x_n) = \alpha \beta^{n(x)} \gamma^{s(x)}

where x_1,\ldots,x_n represent the points of the pattern, n(x) is the number of points in the pattern, s(x) is the number of distinct unordered pairs of points that are closer than R units apart, and \alpha is the normalising constant. Intuitively, each point of the pattern contributes a factor \beta to the probability density, and each pair of points closer than r units apart contributes a factor \gamma to the density.

The interaction parameter \gamma must be less than or equal to 1 in order that the process be well-defined (Kelly and Ripley, 1976). This model describes an “ordered” or “inhibitive” pattern. If \gamma=1 it reduces to a Poisson process (complete spatial randomness) with intensity \beta. If \gamma=0 it is called a “hard core process” with hard core radius R/2, since no pair of points is permitted to lie closer than R units apart.

The simulation algorithm used to generate the point pattern is ‘dominated coupling from the past’ as implemented by Berthelsen and \Moller (2002, 2003). This is a ‘perfect simulation’ or ‘exact simulation’ algorithm, so called because the output of the algorithm is guaranteed to have the correct probability distribution exactly (unlike the Metropolis-Hastings algorithm used in rmh, whose output is only approximately correct).

There is a tiny chance that the algorithm will run out of space before it has terminated. If this occurs, an error message will be generated.

Value

If nsim = 1, a point pattern (object of class "ppp"). If nsim > 1, a list of point patterns.

Author(s)

Kasper Klitgaard Berthelsen, adapted for spatstat by \adrian

References

Berthelsen, K.K. and \Moller, J. (2002) A primer on perfect simulation for spatial point processes. Bulletin of the Brazilian Mathematical Society 33, 351-367.

Berthelsen, K.K. and \Moller, J. (2003) Likelihood and non-parametric Bayesian MCMC inference for spatial point processes based on perfect simulation and path sampling. Scandinavian Journal of Statistics 30, 549-564.

Kelly, F.P. and Ripley, B.D. (1976) On Strauss's model for clustering. Biometrika 63, 357–360.

\Moller

, J. and Waagepetersen, R. (2003). Statistical Inference and Simulation for Spatial Point Processes. Chapman and Hall/CRC.

Strauss, D.J. (1975) A model for clustering. Biometrika 62, 467–475.

See Also

rmh, Strauss, rHardcore, rStraussHard, rDiggleGratton, rDGS, rPenttinen.

Examples

  X <- rStrauss(0.05,0.2,1.5,square(50))

spatstat.random documentation built on Sept. 30, 2024, 9:46 a.m.