spdynmod: Spatio-Dynamic Wetland Plant Communities Model
Version 1.1.3

A spatio-dynamic modelling package that focuses on three characteristic wetland plant communities in a semiarid Mediterranean wetland in response to hydrological pressures from the catchment. The package includes the data on watershed hydrological pressure and the initial raster maps of plant communities but also allows for random initial distribution of plant communities. Ongoing developments of the package focus on offering easy to use tools for creating other spatio-dynamic models.

AuthorJavier Martinez-Lopez <javi.martinez.lopez@gmail.com>, Babak Naimi <naimi.b@gmail.com>, Julia Martinez-Fernandez <juliamf@um.es>
Date of publication2015-12-30 12:44:47
MaintainerJavier Martinez-Lopez <javi.martinez.lopez@gmail.com>
LicenseGPL (>= 2)
Version1.1.3
URL https://github.com/javimarlop/spdynmod
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("spdynmod")

Popular man pages

animate_bs: Make an animation of the model output in relation to bare...
animate_rb: Make an animation of the model output in relation to reed...
animate_ss: Make an animation of the model output in relation to the salt...
mrgf: A function to perform Multiple Resolution Goodness of Fit.
plot_maps: Plot abundance maps of plant communities.
run_model: Run the model.
spdynmod: spdynmod model
See all...

All man pages Function index File listing

Man pages

animate_bs: Make an animation of the model output in relation to bare...
animate_model: Make an animation of the model output containing all state...
animate_rb: Make an animation of the model output in relation to reed...
animate_sm: Make an animation of the model output in relation to the salt...
animate_ss: Make an animation of the model output in relation to the salt...
mrgf: A function to perform Multiple Resolution Goodness of Fit.
neigh_cell: A function to identify neighboring cells.
plot_maps: Plot abundance maps of plant communities.
run_model: Run the model.
spdynmod: spdynmod model

Functions

COSWAVE Source code
COUNTER Source code
DELAY Source code
EXPRAND Source code
LOGNORMAL Source code
MOD Source code
NORMAL Source code
POISON Source code
RANDOM Source code
SINWAVE Source code
TREND Source code
animate_bs Man page Source code
animate_model Man page Source code
animate_rb Man page Source code
animate_sm Man page Source code
animate_ss Man page Source code
inputData Source code
mrgf Man page Source code
neigh_cell Man page Source code
plot_maps Man page Source code
rnd_init_maps Source code
run_model Man page Source code
spdynmod Man page Source code
spdynmod-package Man page

Files

inst
inst/extdata
inst/extdata/wetland.geojson
inst/extdata/mc84_34.asc
inst/extdata/y1997_rs.asc
inst/extdata/mc84_1_reclass.asc
inst/extdata/rambla11_cr10_dist_t1.asc
inst/extdata/y1992_mod.asc
inst/extdata/ramblas_cr10_dist_t1_ave.asc
inst/extdata/mc84_1_reclass3.asc
inst/extdata/y1995_rs.asc
inst/extdata/r2.asc
inst/extdata/y1997_mod.asc
inst/extdata/watershed.kml
inst/extdata/mc_dynmodv2_7_Data_IPRH.csv
inst/extdata/y2008_rs.asc
inst/extdata/rambla22_cr10_dist_t1.asc
inst/extdata/mc84_4_reclass3.asc
inst/extdata/wetland.kml
inst/extdata/y1995_mod.asc
inst/extdata/log_cr10_acum_rm_t1_aver.asc
inst/extdata/y2001_rs.asc
inst/extdata/y2001_mod.asc
inst/extdata/y1984_rs.asc
inst/extdata/y1992_rs.asc
inst/extdata/mc84_2_reclass3.asc
inst/extdata/y2008_mod.asc
inst/extdata/watershed.geojson
inst/doc
inst/doc/isem2013_jml.pdf
inst/doc/isem2013_jml.Rnw
NAMESPACE
NEWS
R
R/spdynmod-package.r
R/animate_model.R
R/animate_rb.R
R/mrgf.R
R/mc_dynmodv2_7_functions.R
R/plot_maps.R
R/animate_sm.R
R/animate_ss.R
R/run_model.R
R/neigh_cell.R
R/rnd_init_maps.R
R/spdynmod.R
R/animate_bs.R
vignettes
vignettes/figures
vignettes/figures/mcdynmod3.png
vignettes/figures/growth.png
vignettes/figures/mc_ila_warp_time.png
vignettes/figures/val_all_areas.png
vignettes/figures/cr10.png
vignettes/figures/mcdynmod1.png
vignettes/figures/mc_ila_pcoms.png
vignettes/figures/bandeau_conf.png
vignettes/figures/fig1.png
vignettes/figures/neighborhood3.png
vignettes/figures/env_spat_var.png
vignettes/figures/expansion2.png
vignettes/figures/neighborhood2.png
vignettes/figures/vegmaps_mc.png
vignettes/figures/cr10_ws_lulc.png
vignettes/figures/pixel.png
vignettes/figures/Rlogo.png
vignettes/figures/rstack_compar.png
vignettes/colourlist.sty
vignettes/isem2013_jml.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/animate_ss.Rd
man/spdynmod.Rd
man/animate_model.Rd
man/run_model.Rd
man/animate_bs.Rd
man/animate_sm.Rd
man/plot_maps.Rd
man/mrgf.Rd
man/neigh_cell.Rd
man/animate_rb.Rd
spdynmod documentation built on May 20, 2017, 2:55 a.m.

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