spdynmod: Spatio-Dynamic Wetland Plant Communities Model

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A spatio-dynamic modelling package that focuses on three characteristic wetland plant communities in a semiarid Mediterranean wetland in response to hydrological pressures from the catchment. The package includes the data on watershed hydrological pressure and the initial raster maps of plant communities but also allows for random initial distribution of plant communities. Ongoing developments of the package focus on offering easy to use tools for creating other spatio-dynamic models.

Author
Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>, Babak Naimi <naimi.b@gmail.com>, Julia Martinez-Fernandez <juliamf@um.es>
Date of publication
2015-12-30 12:44:47
Maintainer
Javier Martinez-Lopez <javi.martinez.lopez@gmail.com>
License
GPL (>= 2)
Version
1.1.3
URLs

View on CRAN

Man pages

animate_bs
Make an animation of the model output in relation to bare...
animate_model
Make an animation of the model output containing all state...
animate_rb
Make an animation of the model output in relation to reed...
animate_sm
Make an animation of the model output in relation to the salt...
animate_ss
Make an animation of the model output in relation to the salt...
mrgf
A function to perform Multiple Resolution Goodness of Fit.
neigh_cell
A function to identify neighboring cells.
plot_maps
Plot abundance maps of plant communities.
run_model
Run the model.
spdynmod
spdynmod model

Files in this package

spdynmod
spdynmod/inst
spdynmod/inst/extdata
spdynmod/inst/extdata/wetland.geojson
spdynmod/inst/extdata/mc84_34.asc
spdynmod/inst/extdata/y1997_rs.asc
spdynmod/inst/extdata/mc84_1_reclass.asc
spdynmod/inst/extdata/rambla11_cr10_dist_t1.asc
spdynmod/inst/extdata/y1992_mod.asc
spdynmod/inst/extdata/ramblas_cr10_dist_t1_ave.asc
spdynmod/inst/extdata/mc84_1_reclass3.asc
spdynmod/inst/extdata/y1995_rs.asc
spdynmod/inst/extdata/r2.asc
spdynmod/inst/extdata/y1997_mod.asc
spdynmod/inst/extdata/watershed.kml
spdynmod/inst/extdata/mc_dynmodv2_7_Data_IPRH.csv
spdynmod/inst/extdata/y2008_rs.asc
spdynmod/inst/extdata/rambla22_cr10_dist_t1.asc
spdynmod/inst/extdata/mc84_4_reclass3.asc
spdynmod/inst/extdata/wetland.kml
spdynmod/inst/extdata/y1995_mod.asc
spdynmod/inst/extdata/log_cr10_acum_rm_t1_aver.asc
spdynmod/inst/extdata/y2001_rs.asc
spdynmod/inst/extdata/y2001_mod.asc
spdynmod/inst/extdata/y1984_rs.asc
spdynmod/inst/extdata/y1992_rs.asc
spdynmod/inst/extdata/mc84_2_reclass3.asc
spdynmod/inst/extdata/y2008_mod.asc
spdynmod/inst/extdata/watershed.geojson
spdynmod/inst/doc
spdynmod/inst/doc/isem2013_jml.pdf
spdynmod/inst/doc/isem2013_jml.Rnw
spdynmod/NAMESPACE
spdynmod/NEWS
spdynmod/R
spdynmod/R/spdynmod-package.r
spdynmod/R/animate_model.R
spdynmod/R/animate_rb.R
spdynmod/R/mrgf.R
spdynmod/R/mc_dynmodv2_7_functions.R
spdynmod/R/plot_maps.R
spdynmod/R/animate_sm.R
spdynmod/R/animate_ss.R
spdynmod/R/run_model.R
spdynmod/R/neigh_cell.R
spdynmod/R/rnd_init_maps.R
spdynmod/R/spdynmod.R
spdynmod/R/animate_bs.R
spdynmod/vignettes
spdynmod/vignettes/figures
spdynmod/vignettes/figures/mcdynmod3.png
spdynmod/vignettes/figures/growth.png
spdynmod/vignettes/figures/mc_ila_warp_time.png
spdynmod/vignettes/figures/val_all_areas.png
spdynmod/vignettes/figures/cr10.png
spdynmod/vignettes/figures/mcdynmod1.png
spdynmod/vignettes/figures/mc_ila_pcoms.png
spdynmod/vignettes/figures/bandeau_conf.png
spdynmod/vignettes/figures/fig1.png
spdynmod/vignettes/figures/neighborhood3.png
spdynmod/vignettes/figures/env_spat_var.png
spdynmod/vignettes/figures/expansion2.png
spdynmod/vignettes/figures/neighborhood2.png
spdynmod/vignettes/figures/vegmaps_mc.png
spdynmod/vignettes/figures/cr10_ws_lulc.png
spdynmod/vignettes/figures/pixel.png
spdynmod/vignettes/figures/Rlogo.png
spdynmod/vignettes/figures/rstack_compar.png
spdynmod/vignettes/colourlist.sty
spdynmod/vignettes/isem2013_jml.Rnw
spdynmod/MD5
spdynmod/build
spdynmod/build/vignette.rds
spdynmod/DESCRIPTION
spdynmod/man
spdynmod/man/animate_ss.Rd
spdynmod/man/spdynmod.Rd
spdynmod/man/animate_model.Rd
spdynmod/man/run_model.Rd
spdynmod/man/animate_bs.Rd
spdynmod/man/animate_sm.Rd
spdynmod/man/plot_maps.Rd
spdynmod/man/mrgf.Rd
spdynmod/man/neigh_cell.Rd
spdynmod/man/animate_rb.Rd