ggenvironmentalspace: Title Plotting to show the quality controlled data in...
In specleanr: Detecting Environmental Outliers in Data Analysis Pipelines

ggenvironmentalspace

R Documentation

Title Plotting to show the quality controlled data in environmental space.

Description

Title Plotting to show the quality controlled data in environmental space.

Usage

ggenvironmentalspace(
  qcdata,
  xvar = NULL,
  yvar = NULL,
  zvar = NULL,
  labelvar = NULL,
  type = "2D",
  xlab = NULL,
  ylab = NULL,
  zlab = NULL,
  ncol = 2,
  nrow = 2,
  scalecolor = "viridis",
  colorvalues = "auto",
  legend_position = "right",
  legend_inside = NULL,
  pointsize = 1,
  themebackground = "bw",
  fontsize = 13,
  legtitle = "blank",
  ggxangle = 1,
  xhjust = 0.5,
  xvjust = 1,
  main = NULL,
  pch = "auto",
  lpos3d = "left",
  cexsym = NULL
)

Arguments

`qcdata`	`dataframe` Data output from quality controlled function `extract_clean_data` and `classify_data`.
`xvar`	`string` The variable to be on the x-axis.
`yvar`	`string` The variable to be on the y-axis.
`zvar`	`string` The variable to be on the z-axis only if the 3D plot type is selected..
`labelvar`	`string` Column name in the quality controlled data that has the labels. This applies is the 3D plot is selected.
`type`	`string` Its `1D`, `2D` for a two dimensional ggplot2 graph or `3D` for a 3-dimensional graph for multivariate data.
`xlab`, `ylab`, `zlab`	`string` x-axis, y-axis, and z-axis label.
`ncol`, `nrow`	`integer` If number of groups are greater than 1, then number of rows and columns can be set. Check ggplot2 facet parameters on how the columns are set.
`scalecolor`	`string` The scale color themes supported are grey, manual, viridis. If `manual` is selected, then the `colorvalues` should be provided for the different colors for each data label.
`colorvalues`	If `manual` is selected, then the `colorvalues` should be provided for the different colors for each data label. If 3D is selected and `colorvalues` is not `auto`, then colors should determined.
`legend_position`	`string` Its either `bottom`, `top` or `inside`. If the `inside` is selected then the vector with graph coordinates should be provided to avoid the legend overlap with the graph contents.
`legend_inside`	`vector` If the `inside` for legend position is selected then the vector with graph coordinates should be provided to avoid the legend overlap with the graph contents.
`pointsize`	`decimal` The size of the points.
`themebackground`	`string` Either `classic`, `bw` or `gray` to set the plot theme. This is based on ggplot2.
`fontsize`	`integer` Indicates the sizes of fonts for the whole graph.
`legtitle`	`string` Either `blank` or `TRUE` to set the legend title for the 2D plot.
`ggxangle`	`integer` Indicates the angle of the x-axis text. The dafualt is 45 but depend on the data.
`xhjust`	`numeric` Indicates the distance of the x-axis text from the x-axis line in a vertical direction.
`xvjust`	`numeric` Indicates the distance of the x-axis text from the x-axis line in a horizontal direction.
`main`	`string` Plot title
`pch`	`string` Either `auto`: the point characters will be automatically set or different pch are set.
`lpos3d`	`string` Indicates the legend position for the 3D graph. bottom, left, and right are accepted.
`cexsym`	`numeric` The size of pch in the 3D plot.