spiral_phylo: Draw phylogenetic tree

In spiralize: Visualize Data on Spirals

Draw phylogenetic tree

Description

Draw phylogenetic tree

Usage

spiral_phylo(obj, gp = gpar(), log = FALSE, reverse = FALSE,
    group = NULL, group_col = NULL, track_index = current_track_index())

Arguments

obj	A phylo object.
gp	Graphics parameters of the tree edges.
log	Whether the height of the tree should be log-transformed (log10(x + 1))?
reverse	Whether the tree should be reversed?
group	A categorical variable for splitting the tree.
group_col	A named vector which contains group colors.
track_index	Index of the track.

Value

Height of the phylogenetic tree.

Examples

require(ape)
data(bird.families)
n = length(bird.families$tip.label)
spiral_initialize(xlim = c(0, n), start = 360, end = 360*3)
spiral_track(height = 0.8)
spiral_phylo(bird.families)

spiralize documentation built on Aug. 9, 2022, 5:09 p.m.