Nothing
tests/testthat/_snaps/spiro_summary.md
In spiro: Manage Data from Cardiopulmonary Exercise Testing
stepwise summary works
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0 60 0.0 500.19 411.74 13.03 NA NA NA 7.58
2 1 300 2.0 1860.92 1585.75 39.87 NA NA NA 28.20
3 2 300 2.4 2097.82 1805.27 44.63 NA NA NA 31.79
4 3 300 2.8 2413.01 2122.17 52.63 NA NA NA 36.56
5 4 300 3.2 2710.68 2319.93 57.19 NA NA NA 41.07
6 5 300 3.6 3048.75 2684.87 67.45 NA NA NA 46.19
7 6 300 4.0 3404.02 3026.70 75.91 NA NA NA 51.58
8 7 300 4.4 3724.37 3383.64 88.36 NA NA NA 56.43
9 8 300 4.8 4223.82 3993.55 106.44 NA NA NA 64.00
10 9 300 5.2 4573.91 4488.36 127.54 NA NA NA 69.30
RE RER CHO FO
1 NA 0.82 0.27 0.15
2 234.97 0.85 1.27 0.46
3 220.73 0.86 1.51 0.49
4 217.62 0.88 1.95 0.48
5 213.91 0.86 1.89 0.65
6 213.86 0.88 2.47 0.60
7 214.90 0.89 2.90 0.62
8 213.75 0.91 3.50 0.56
9 222.21 0.95 4.68 0.37
10 222.12 0.98 5.82 0.12
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
spiro_summary returns message when shortening interval
Code
spiro_summary(ramp_data, interval = 300)
Message <simpleMessage>
for load steps, interval was set to 30 seconds
for step 23, interval was set to length of step (10 seconds)
Output
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
input is validated
'interval' must be greater or equal to 1
'quiet' must be either TRUE or FALSE
'exclude' must be either TRUE or FALSE
Data does not contain an exercise protocol
Try the spiro package in your browser
Any scripts or data that you put into this service are public.
spiro documentation built on Aug. 14, 2023, 5:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
stepwise summary works
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0 60 0.0 500.19 411.74 13.03 NA NA NA 7.58
2 1 300 2.0 1860.92 1585.75 39.87 NA NA NA 28.20
3 2 300 2.4 2097.82 1805.27 44.63 NA NA NA 31.79
4 3 300 2.8 2413.01 2122.17 52.63 NA NA NA 36.56
5 4 300 3.2 2710.68 2319.93 57.19 NA NA NA 41.07
6 5 300 3.6 3048.75 2684.87 67.45 NA NA NA 46.19
7 6 300 4.0 3404.02 3026.70 75.91 NA NA NA 51.58
8 7 300 4.4 3724.37 3383.64 88.36 NA NA NA 56.43
9 8 300 4.8 4223.82 3993.55 106.44 NA NA NA 64.00
10 9 300 5.2 4573.91 4488.36 127.54 NA NA NA 69.30
RE RER CHO FO
1 NA 0.82 0.27 0.15
2 234.97 0.85 1.27 0.46
3 220.73 0.86 1.51 0.49
4 217.62 0.88 1.95 0.48
5 213.91 0.86 1.89 0.65
6 213.86 0.88 2.47 0.60
7 214.90 0.89 2.90 0.62
8 213.75 0.91 3.50 0.56
9 222.21 0.95 4.68 0.37
10 222.12 0.98 5.82 0.12
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
spiro_summary returns message when shortening interval
Code
spiro_summary(ramp_data, interval = 300)
Message <simpleMessage>
for load steps, interval was set to 30 seconds
for step 23, interval was set to length of step (10 seconds)
Output
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
input is validated
'interval' must be greater or equal to 1
'quiet' must be either TRUE or FALSE
'exclude' must be either TRUE or FALSE
Data does not contain an exercise protocol
Try the spiro package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.